Pseudomonas putida H, AC138_RS08280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAAGCTCAGATCGTTGCCGAATATCAGCAAGCCGCCGGCGATACCGGTAGCCCGGAAGTGCAGGTTGCTCTGCTGACCGCCAACATCAACAAGCTGCAA GGCCACTTCAAGGCCAACGACAAAGACCACCACTCCCGTCGTGGTCTGATCCGTATGGTCAACCAGCGTCGTAAGCTGCTGGATTACCTGAAGGGCAAAG ACACCACTCGTTACAGCGCCCTGATCGGTCGCCTGGGCCTGCGTCGCTAATAGCGGCCTGGTCAGTGGTGTGCGTGGGGTGTCGCAGGCTTCGGCAGGGC TGTTTTGCAGCGCTGCCGTTGGGCACTTCACGCGTATCTCCGAGGTTGGCAGCCTGGCAATGCTGAGCGGTTTTTCCGCTTGGTGCCAGGCTCCCAGCCT CGTGTTGTATCTGGACGGTCAATGGGGCCGATTCCCCGTTCTGCCCAAGAATTCGCAAGAAACCAGTTCCCCCAAGAGCCACTGAAAAAGGTAGGAAACC
|
|
| DNA Sequence for Gene |
>AC138_RS08280
GTGAACCCGGTAATCAAGACTTTCCAGTTCGGTCAATCGACCGTCACTCTCGAAACGGGCCGTATTGCCCGTCAGGCAACCGGCGCCGTGCTGGTTACCG TCGACAACGACGTCACCGTGCTGGTGACTGTGGTAGGCGCCAAACAGGCTGATCCAGGCAAGGGTTTCTTCCCGCTGTCGGTTCACTACCAGGAAAAGAC CTACGCCGCTGGCAAGATCCCAGGTGGCTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAGACGCTGACCTCGCGCCTGATCGACCGTCCGATCCGT CCGCTGTTCCCGGAAGGCTTCATGAACGAAGTGCAGGTCGTCTGCACCGTGGTTTCCACCAGCAAGAAGACCGACCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATTTCCGGCATTCCGTTCGAAGGCCCGATCGGCGCTGCCCGCGTTGCCTTCCACGAAAGCACTGGCTACCTGCTGAACCCGAC CTATGAGCAACTGGCTGCCTCGAGCCTGGACATGGTCGTTGCCGGTACCTCCGACGCTGTACTGATGGTTGAATCGGAAGCTCAAGAGCTGACCGAAGAC CAGATGCTGGGTGCCGTACTGTTCGCCCACGACGAATTCCAGGCTGTTATCCAGGCTGTCAAAGAGCTGGCTGCCGAAGCTGGCAAGCCGACTTGGGACT GGAAACCTGCCGTTGCCAACACCGAGCTGTTCAATGCTATCCGCGCCGAGTTCGGCGAAGCGGTTTCGCAGGGTTACACCATCACCGTCAAAGCCGACCG CTACGCGCGTCTGGGTGAGCTGCGTGACCAGGCGGTTGCCAAGTTCTCCGGTGAAGAAGGCCAGCCTTCGGCTTCCGAAGTAAAAGAGATCTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTCAACGGCAAGCCACGTATCGACGGCCGCGACAACAAGACCGTACGCCCGCTGAACATCGAAGTGGGTG TGCTGCCAAAAACTCACGGTTCGGCACTGTTCACCCGTGGCGAAACCCAGGCCCTGGTCGTTGCGACCCTGGGTACTGCCCGTGATGCCCAGCTGCTGGA CACCCTCGAAGGCGAGAAGAAAGACCCCTTCATGCTGCACTACAACTTCCCACCGTTCTCGGTAGGTGAGTGTGGCCGCATGGGCGGTGCTGGCCGTCGC GAAATCGGCCACGGCCGTCTGGCCCGCCGTTCGGTTCAGGCCATGCTGCCTGCTGCTGACGTGTTCCCGTACACCATCCGCGTGGTTTCGGAAATCACCG AATCCAACGGTTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCCCTGATGGACGCCGGTGTGCCGATGAAGGCGCCGGTTGCCGGTATCGCCAT GGGCCTGGTCAAGGAAGGCGACAAGTTCGCAGTCCTGACTGACATCCTGGGTGACGAAGACCACCTGGGCGACATGGACTTCAAGGTAGCCGGTACCGCC AAAGGCGTCACCGCGCTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAAGCCCTGGAAGCGCGCCTGAACA TCCTCGGCCAGATGAACCAGGTTATTGGCCAGTCGCGTACCGAACTGTCGGCCAACGCCCCGACCATGATCGCGATGAAGATCGACACCGACAAGATCCG TGACGTCATCGGTAAAGGCGGCGCCACCATTCGCGCCATCTGCGAAGAGACCAAGGCTTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCAGATGCTGCCAAGCAGCGCATCCTGGGCATCACCGCTGAGGCCGAGATCGGCAAGATCTACGTCGGCAAGGTTGAGCGCATTG TCGACTTCGGCGCCTTCGTCAACATCCTGCCTGGCAAGGACGGTTTGGTGCACATCTCCATGCTGAGCGATGCTCGCGTCGAGAAAGTCACCGACATCCT CAAGGAAGGCCAGGAAGTTGAAGTGCTTGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCGATCAAAGACGTCCCTGCGGCCAAGGCCTCGGGC GTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGAACGTCACGCAATAGAGAAAGGGCCCTTCGCAGGGCCCTTTTTTCATGGGGACGGGAACCTTTTGCGGACTTGCATCTTGCATGCAGGTTTACCGCG CTGATTGCAAAATGCACGACCACCGAAGTGATAGATATTTGCTAACTTATTGATTTAAAAGGAAATAACAGAAGCAGCAAAGCTGGCACAGCCCGTGCAA CTACCTTCATACCTGACGCCAGGACATACGGCGCAGACCTTTCGAAAAACAGGAGTGACCCACATGAAGAAGTTCGCCATTGCTGCCGCTACTGCTACCG CTCTGACCCTGACCATGGCTAACGGTGCATTCGCCGCTGAGCCAACCCAGGCTCCAGTCATGTTGGCGGCCAACACCGTCGACAACGCCAAGCAAGAAGG CTCCGACACTTGGATCACTACCAAGGTCAAAGCTGATCTGCTGACTGAAAAAGGCATCCCAGGCAGCGACATCAAAGTCGAGACCAGCCAAGGCGTTGTT
|
|
| Amino Acid Sequence |
>polyribonucleotide nucleotidyltransferase
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTSDAVLMVESEAQELTED QMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVANTELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGE IEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQVIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVPAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|