Pseudomonas putida H, AC138_RS02525
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCACCAATCGGGACCTCCCGCTGGCGCTGGGCATTGATGACATCAACATTCTGACCGAACTTACGCCGCCTCTGGCCACCTACACCAATCTCTGTACAC CCACCCGCCCCTGTCGCCCGGTGCTGGACGGCCAGTTGCAGTGGGCATTGATCTCCAACATGTCGCTCAACTACCTGTCCTTGCTCTCGGTAGAGCCGCT GAAAGCGGTGATCCGCGCCTACGACTTCATGGCCCTGCACGACATCCAGCAGGCACGCACCACCCGTAAACGCCTGGAAGGTATGCGCGACATTCATACG CAGCCCATGGATTGGCTGATCAAGGGGCAACCCATTCGCGGCCTGCACACCCGGCTGAAACTGGACCAGACCGCCTTCCTCTGCGAAGGCGACTTGTACC TGTTCAGCTGTGTGCTCGCTCATTTCTTCGCCCTGTACGCCAGCATCAATTCCTTCCACCAGCTGGAAGTGATCAACACCACCAATAACGAGCATTACAC
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| DNA Sequence for Gene |
>AC138_RS02525
ATGGCCAATACAGACCGGCAAGCAACCGCTGATCTAGCCGACAAGTTGCTCTGCGAAGCGCACCAGTACAACTTCTTCCAGTTGCTGGAGCGGTTGCACG GGCTGCATGGCGATGACCTGGAACCCCGTTGGCCGGACAAGGCCACCCGGCGGCGCGTGCGCCTGGCCTGCGACCCACGGCTGACCTTCCCTGTTTCGGA CGTGTACAAAGCCCAGCGGATGCCCGCTGAGGAAGCGCGCTACCGCATCATTGCCACATTCCTGGGGTTGCACGGCACCGATTCGCCATTGCCCACCTAT TACCTGGAACAGGTGGCGTATGAACATGCGCATGGCATCGGTGTACGGCCGGCCTTCTTCGACTTTTTCAACCATTACCTGCTCAGCCTGTTGCACCGTA TCTGGCGCAAGTACCGCTATTACATCCGCTTCCAGCCAGGTGCCAGTGACGGGTTCTCGCAGTACGTGTTTGCCCTGCTGGGGCTTAACGACAAGCAGTT GCGAGGGGACACGGCGCTGCCCTGGAGCCGCCTGCTCAGTTTTGCCGGCGTGATCGCCAGCCGCAGCCGAGCGCCGGGCACTGTAGCCGGCATCATTGCG CACTGCTTCGACCTCAAGCAGGTGCACATCCGCGAGTTCGAGACGCGATCAGTCGTCACGCCGTCCAGGCAGCTTGCAAGCCTGGGGCGGACCAACGGCC AGCTGGGCAGCACGTTCATGATTGGCAGCCGCACGCGCACCCGCAGCAGCAAGTTCACCATCGTGATCAGCGAACTCGACCAGACGCAGCTGCGGGACTT GCTGCCCAGCGGCATCAACTTCGGCCGTTTGCGTGCACTGATCGACTTTCTGCTGCGTGACGGGCTGGCCTATGACCTGGAGCTGCGCCTCAAGCAGAGC GCGTTGTCACCCTTCTGCTTGCACCGCAGCCAGGGCGCATACCTGGGCTGGACCAGCTTCGTCGACGACCGGCATGGCCAGATCAGCCCGGTTGTACGCA TCCGGGGGCGCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACAGTCACCTTGAGCATCACCAACCTCGACCAACTGCAGCACGGCGTTACTGCTCGGCACCTGTTCGATTGCAAGGGCGGCACCATCGGCAGTGGGCG AGCAAACTGGCAGATCAATGACCGCGATCAGACCGTTGCGCCCATCCACTGCGAAATCCGCTGGATCGAAGGCAGCTTCTGTGTGATCGACCACTGCCAC CGTACCTACCTCAATGGCAGTGCCAACAGCCTGGGGCCGCTTCCACCCAGACGCCTGGTTGAGGGTGACCAGCTTCTCATTGGTACCTATCGGCTACAGG TTCAGTACTCCCAGGATCAGGCCTGCACGCGCTCGCTGGAGGACCTGTTCAACCCGGACCCGAGGGTGCTCGACCGCCTGATAGCGGAAGCGCCTGCACC CGCTTGGCCGGCACAGCCTTCTGCCCCCCAACCAGCCGTCGAGATCTGCTCGGTCTTCAAAGCAGCCATGGGGAATGACCCTCTGGCAGCGCTGGACGCG
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| Amino Acid Sequence |
>type VI secretion protein
MANTDRQATADLADKLLCEAHQYNFFQLLERLHGLHGDDLEPRWPDKATRRRVRLACDPRLTFPVSDVYKAQRMPAEEARYRIIATFLGLHGTDSPLPTY YLEQVAYEHAHGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGASDGFSQYVFALLGLNDKQLRGDTALPWSRLLSFAGVIASRSRAPGTVAGIIA HCFDLKQVHIREFETRSVVTPSRQLASLGRTNGQLGSTFMIGSRTRTRSSKFTIVISELDQTQLRDLLPSGINFGRLRALIDFLLRDGLAYDLELRLKQS ALSPFCLHRSQGAYLGWTSFVDDRHGQISPVVRIRGRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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