Pseudomonas putida H, AC138_RS00065

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain H contig_1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AATGTTCGCATCGCTGCTGACACTGGGTGTTACCTACAAAAAAATGAAGTTGGGAGCGGCGACTTCTTTGATGTTAGGGCTCGCGCCCGTCGTGCTGGTG TTGTTGACCTATGCAATGGCTTATTACTGGCGCAGTAAAAGTGATATTCTCCATTTTAAAGGGCAGCGCGTGGAATCCATCGAGCCGCCACAGAAAGTTC AGTGGTGGCAGGCGGGTTTGGCGGCGGGCTTGAGCAGCGTGATCTATCCGCTGATGAAAAGCCATGACGTGCCGGCCACCGGGTTGATCTACTTCTTTGC GCTAATGTCCGTGTTCATGGTGTTTTACAATCGTGACAAGATCAGTGCACTCAGAGACCTGAAAGTGCGCGAAGCGAAGGAAAACCGTCAATACACATTC ATGGATATTGAAACTATTCAGAGCATGCGTGCTGCCTCGTGGTTGGGCAGGCTTTTCGCCGTACGGGCGCGCTGATGTTCACCGCTACAGGGAGTAAATT
DNA Sequence for Gene
>AC138_RS00065
ATGCTAACTGACGTTCTTTCCATGCTCGCGCCGCAAAACAGGCGATTGTTCAAGCTGAATATCCTGACACAAACAGCCAACGATGAGTTTTTGCTGGAGC ACTTTTCCGGCACTGAAGAGCTTTCCAAACTCTATGAATTCGATCTGGCCTTGCTCAGCCAACAGAGCGATGTAAAGCTCAAGTCACTGATTGGCAGCCA GGCCACGGTAGAAATAGAGTTATCCAACGGCTCTTTCCGCCACATTAACGGCTATGTTCAGCGGTTTAGCACCCAAGGCAGCGACGGCGGCTATGTGCGT TATGCAGCCGTGCTAGGGCCGTGGCTGTGGATGCTGACTTGCCGTTTCGATACACGCATTTTTCAAGAAAAATCGGTCCAGGCTGTTGTCAGTGAAGTGT TCGCCGGATTTGGCACGCTGGCCAAGTACGAATTTCGTGTAAGCAAGCCGCTCAAATCGCACAGCTACATTACCCAGTACCGCGAGAGCGATTTCAACTT TGTGCAGCGCTTGCTTGAGAGCGAAGGGCTTTTCTACTACTTCGAGCACACGGCCGACTCCCACCTGATGGTCATCACCGATGACTCCAGCACCTTGTTG CCGCTGCCCGAACAGCCGCAGATTCGCTACCACTCCGCGTCGGTTACCGAAACCGCTGATTCCATTACTCAGTGGCAGTCAACGCGGCAGCTGCAATCCG GTCAAATTGCCGTTCGCACGTTCGACTATCGCCAACCGCGCAACTTCCTACCTGTGACCATGCAAAGCTTGAATCAACAGGGCGATGTGGACAGGTTCGA GATTTATGATTTCCCGGGCCAGTACACCCATGGCAGCTACGAAGATGGCGAAGCCATCGTACGCAACCGTATCGAAGCGCTCGAGTTGATGGGCAAGACC TTCTACGGCGAGAGCAATTGCCGGGCCATGAAGCCGGGTTACACTTTTGAGTTGACCCAGCATTATCTGCACGACACCGGTGCCGCCGAGAACCGTAAGT TTTTGTTGCTGAGCGTGGAGCATCGCGGCAGCAACAACTACATGACGGGCGACCAGGCCGGTTACGTCAACCGATTCGTGTGCGTGCGTAAAAAAATCGC ATACCGCCCGCAGTTGAACACCCGCAAGCCTTTGATCAACGGCCCGCAGACCGCCATCGTTGTCGGCCCCCCAGGCGAGGAAATCTTCACCGACGAACTG GGCCGGGTAAAGCTTCAGTTTCACTGGGATCGCCAGGGGCAGTTCAACGATCAAAGCTCCTGCTGGGTACGTGTCGCCCAGTCCGGTGCCAGCGGTGGCT TCGGCAGCATCCAGATTCCGCGCGTAGGCGACGAAGTGGTGGTGGTGTTCCTGGACGGCAACCCGGACCGGCCGCTGATCATGGGCAGCCTGTACAACAG CACCAACACCCCGCCATGGTCGCTGCCGGCGAACAAGACCCAGAGTGGGTTCCTGACGCGGTCGATGAAGGGCGACGGCGGTACCGCCAACTTCTTCCGC TTCGAGGACAAGGCCGGCGCCGAGCAGATCATCATGCATGCCGAGCGCAACATGGATACCGAGATCGAGCTGGATGAGACCCACGATGTGGGGAATAACC GCTCGATTACTGTTGGTGGTACGCATACCGAAACGGTCAAGAAAGACACCGTGGTGCAGGTGACCGAGGGTTCCTACACCCTGCAGGTCGACAACCAGTT CATCCAGGTGGCCGCCAAGCAGCACATCATCCTGCAGGTGGGCGACAGCAGCATCACGCTGACCCCGGAAGGCATCGAGATCAAAGGCAAGGTCATCGTG ACCACCAGTACCGACACCACCCAGATCACTGGCGCCGCAGTGCGGATCAACGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCAAGGTTCATGTACAAGCCCTCGATCTACGACCGCATCTCTGCCAGGCGCGAAGCGCAAGAGGAGTCTGCGCGGCTGGCCAGTCTGGCGGAAGCTGCT CATGTGCCCGTGGCTGTGCCCGAGCCGGAACCGCTGCCAGCCGTGTTGCAGGATGTCGCCAGCGCTTTCACCTTCGCAGGGTTCTCCTTGCAGTTTCCGC TCGGCTTTCGTTTTCGCGACATCCAGACCACCCTCGAGCATGAAGGCGAGCCGGTCAGCCTCAGCATCCGCCGCCGTGATGTACGCGCCAGGCAGCCGCT GGAGCAACTGTTCCAGAGCGCAGTCGAGGCTTTGCGCGAATTGAACCCGCAACTGCGCGTGATTCGCCAACGTGACTGCCTCCTGGCTGGGAACCCGGCC AAGGTCGTGGACTTTCACTTCAATGCCGGCCACGAGCCTCGGCACGGTCGCCTGGTCGGCGCACTGGTGCCCATCGCCGGCAGCGATTCGCTGCAATGGC
Amino Acid Sequence
>type IV secretion protein Rhs
MLTDVLSMLAPQNRRLFKLNILTQTANDEFLLEHFSGTEELSKLYEFDLALLSQQSDVKLKSLIGSQATVEIELSNGSFRHINGYVQRFSTQGSDGGYVR YAAVLGPWLWMLTCRFDTRIFQEKSVQAVVSEVFAGFGTLAKYEFRVSKPLKSHSYITQYRESDFNFVQRLLESEGLFYYFEHTADSHLMVITDDSSTLL PLPEQPQIRYHSASVTETADSITQWQSTRQLQSGQIAVRTFDYRQPRNFLPVTMQSLNQQGDVDRFEIYDFPGQYTHGSYEDGEAIVRNRIEALELMGKT FYGESNCRAMKPGYTFELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMTGDQAGYVNRFVCVRKKIAYRPQLNTRKPLINGPQTAIVVGPPGEEIFTDEL GRVKLQFHWDRQGQFNDQSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPPWSLPANKTQSGFLTRSMKGDGGTANFFR FEDKAGAEQIIMHAERNMDTEIELDETHDVGNNRSITVGGTHTETVKKDTVVQVTEGSYTLQVDNQFIQVAAKQHIILQVGDSSITLTPEGIEIKGKVIV TTSTDTTQITGAAVRIND
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site