Pseudomonas putida KG-4, V520_RS23075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00036, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCTGCCCGCTGACCAGCGGCGACACCCCGCTGCTGACCTGCGACGTCTGGGAACACGCCTACTACATCGACTACCGCAACCTGCGTCCGAAGTACGT CGAGGCGTTCTGGAACCTGGTCAACTGGGCCTTCGTTGCCGAACAGTTCGAAGGCAAGACCTTCAAGGCCTGAGTCATTCAGCCCTGAACGAAAAACCCG GCCTGGTGCCGGGTTTTTTTATGCCTGTACCGGCCTCTTTGCGGGTGAACCCGCTCCCACAGGTACGGCGCCGCTTGTGGACTTGATGCTATCCCTGTGG GAGCGGGTTTAACCGCGCAAAGCCGGCACGGTTTTGCTTGCTCAGCCCGCATAGCACGCTAACATCAAACCTCTGGATATCGTTACGGCGCATTCAAGTT GCGGGGTCAGGCAACCGATACACTACTGAAGGTCGGCCGATAGTGTATCGTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCA
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| DNA Sequence for Gene |
>V520_RS23075
TTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTCGTGCTGCTGTCGGCGCTGGCGGTCGGTGTCGTGCTCAGCTGTGCGCAAATCG TCTACGACACCTACAAGACCCGCCAGGCCGTGAACAACGATGCCCAGCGCATCCTCGACATGTTCCGCGACCCCTCGACCCAGGCCGTATACAGCCTCGA CCGCGAAATGGGCATGCAAGTGATGGAAGGCCTGTTCCAGGACGAATCGGTACGCATGGCCTCCATCGGCCACCCCAACGAAACCATGCTGGCGGAAAAG TCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTGACCGACCTGATCCTCGGCCAGGAACGCACCTACACTACGCAACTGGTCGGCCGCGGCCCCTACA GCGAATACTACGGCGACCTGAGTATCACCCTGGACACCTCGTCCTACGGCGAAGACTTCCTGATCAACGCCGTGATCATCTTCATCTCCGGCGTGCTGCG GGCCCTGGCCATGGGTCTGGTGCTGTACCTGGTCTACCACTGGCTGCTGACCAAACCGCTGTCGAAGATTATCGAGCACCTCACCCAGATCAACCCCGAC CGCCCCAGCCAGCACCAGCTGCCCCTGCTCAAGGGCCACGAGAAGAACGAGCTGGGTCTCTGGGTAAATACCGCCAACCAGTTGCTGGCCTCGATCGAGC GCAACACCCATCTGCGCCACGAGGCGGAAAACAGCCTGCAACGCATGGCCCAGTACGACTTCCTCACCGGCCTGCCCAACCGCCAGCAACTGCAGCAGCA ACTGGACAAGATCCTCGTCGACGGCGGCCGCCTGCAACACCGTGTGGCAGTACTGTGCGTAGGCCTGGACGACTTCAAGGGCATCAACGAGCAGTTCAGC TACCAGGTCGGCGACCAGCTGCTGCTGGCCCTGGCCGACCGCCTGCGCGCCCACAGTGGCCGCCTGGGCGCCCTGGCACGCCTGGGTGGCGACCAGTTCG CCCTGGTGCAGGCCAATATCGAGCAGCCTTACGAGGCGGCCGAACTGGCACAGAGTATCCTCGATGACCTGGAAGTGCCGTTCGACCTCGACCACCACCA GCAAATCCGCCTGCGCGCCACCATCGGCATCACACTGTTCCCGGAAGACGGCGACAGCACCGAGAAGCTGTTGCAGAAAGCCGAACAGACCATGACCCTG GCCAAGGCCCGTTCGCGCAACCGCTACCAGTTCTACATCGCCAGCGTGGACAGCGAGATGCGCCGCCGTCGCGAGCTGGAAAAGGACCTGCGCGAAGCCC TGCCACGCAACCAGCTGTACCTGGTGTATCAGCCACAGATCAGCTACCGCGACCACCGCGTGGTCGGTGTCGAGGCGCTGCTGCGCTGGCAGCACCCGGA GCTGGGCATGGTACCGCCAGACCAGTTCATCCCCCTGGCCGAACAGAACGGCAGCATCATCAGCATTGGCGAATGGGTGCTCGACCAGGCCTGCCGGCAA CTGCGCGAATGGCACGACATGGGCTTCAGCGACCTGCGCATGGCGGTCAACCTGTCCACCGTGCAGCTGCACCACAACGAACTGCCGCGGGTAGTCAACA ACCTGCTGCAGGCCTACCGCCTGCCACCACGCAGCCTGGAGCTGGAAGTCACCGAGACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCACCTGCT GAGCCTGCGCCGCTCCGGAGCACTGATTGCCATCGACGACTTCGGCACCGGCTACTCGTCGCTCAGCTACCTGAAATCGCTGCCGCTGGACAAGATCAAG ATCGACAAGAGCTTCGTCCAGGACCTGCTGGACGACGATGACGACGCTACCATCGTTCGTGCCATCATCCAGCTCGGCAAGAGCCTGGGGATGCAGGTGA TCGCCGAAGGCGTGGAAACCGCCGAACAGGAAAGCTATATCGTCGCCCAAGGCTGCCACGAGGGCCAGGGCTACCACTACAGCAAGCCGCTGTCGGCCCG TGAGCTGACCAACTTCCTCAAGCAGGCGCAGCGCAACCAGGTTTCGATGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCCAGCCCGGTTACAGGCCGTGACCGGCATTTACACGAATTGCATGCCCGCCCCCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGCCGTTTCG CGTGCCACGGCGCACGGTCTACCCATGGTCCAACCACACGACGCAGGAAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCATTG CCATCGCTCTCGCCGGTTGCGGTGAAGGCAAGGACGACAAGGCCGCCGCGCCGCAAGCTCAGGCACCTGCTGCCGCCAGCACCAACGCTGCGGCGCCCGG GGTTGTCGACGAAGCCGCCGGCAAAGCCGTGGTCAAGCATTACGCAGAGCTGGTCTACGCCGTGTACAGCGATTCGCTGAGCACCGCCAAGACTCTGCAG ACCGCAGTCGACGCGTTCCTGGCCAAGCCCAACGACGAAACCCTGAAGGCAGCCAGGGAAGCCTGGGTCGCCTCGCGCGTACCGTACCTGCAGAGCGAAG
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVNNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEK SRPLQDMSMRWLTDLILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPD RPSQHQLPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFS YQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTL AKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQ LREWHDMGFSDLRMAVNLSTVQLHHNELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIK IDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQESYIVAQGCHEGQGYHYSKPLSARELTNFLKQAQRNQVSMF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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