Pseudomonas putida KG-4, V520_RS19140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida KG-4 contig00021, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGTGTTGCGTGCACGCAGCAGCCTGAAGGGCGAGTTCCGCATGCAGCAGACCACCATCGCCCCGGTGCAGAACAACCCGCTGAAGTTCGCCCCAAATGC CGACGAGGCGTTGCTGCTGTTGCTGCGTCACGGCAACCAGGCGTTCATGGCGCCGGACCAGGCCGTGCGTGAAAGCTTCGATGATGTGCGCGCCCACCAA CTGGCGGTGATGGCGGGCGTGCAGGCCGCCATCAAGCACCTGCTTGCGTGTTTCCAGCCGGCGCGCCTGGAGCAGCGCCTGGCACCTGCGGCTGGGCTGG CCAAGTTGTTCGGTGGCTCGCGCCAGGCCCACTGCTGGCAGCAGTTCACCGAGCTTTACGGGCAGATCTCCCGTGAAGCCGAAGACGATTTCCAGGAACT GTTCGGCCGCGAATTCAGCCGCGCCTACGAGGCCCACAGCAACCGTTTGCAACGTAGTTGAGCGCACCCAGGAAGACCACGGTACGTCAAGAGGACAAGG
DNA Sequence for Gene
>V520_RS19140
ATGAAAGCAATAAGACTGGTCGCAGCCCTGAGCCTGGTGCTGCTGGCCGCCTGCAGCAAGGACACGCCGGTTGCCCCCGCTGCCGACAGTGCACCGGACA GCGCCGCCGTGACCCTGTATTTCAGTGCCGCCGAGGGGCTGAACCCAGGCCCTGGCGGCACGCCTGCGCCGGTACGGGTGCGCCTGTACGAGTTGAAGAA CAGCGCGGCATTTGCCCGCGCCGACTACTTCGCCCTGGCCGAGCGCGCCCAGGCCACCCTCGGCGCCGACCTGATCGACCAGGACGAAGTGCTGTTGCAA CCCGGCGGGCAGTTGCGCGTGGAGCGTCCGCTCGACCCTGCCACTCGCCACATCGGCCTGGTGGTCGGTTACCGCGAGATCGACCAGGCCCAGTGGCGCA GCGTGCTGCCGGTGCCGCCGCGGGACTATCAGATCAGCCTCGATGTGCGTGCCGTGCGCAGCGCCGTGGCCACCCCACAACCTGAACCTGCCCGCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAATCGGAGTCCCCATGTCCTGGAACAATCGCGTGGTGTGGTCGGAAGGCATGTTCATCACGACCCAGCATTTCCAACAGCATGATCGCTACCTCGAAC ACTTGGTCGACGCCCGCAACCGGCCGCTGAACGCGGCCGCCTGGGGGTTCTCCGAGCTGCTGCTCGATCAGGGCCTGCTTGCCCAGGGCAAGGTGGCGAT TATCAGCGCCCGCGGCTTGCTGCCCGATGGCACGCCGTTCGACATTCCCCGCGACGACCTGCCACCCGCGCCGCTGGAAGTGCCCGACGATCTGCGCGAT GGCGTTGTCCACCTGGGGCTGCCGCTCAAGCGAGCAGGGGCCCGCGACACCGTCGACGAGGGCGAAGCCCTCGCTGGCGCCCGTTACATCAGCCGAGTCA GCGAAGTGCGTGACGACAACGCGCCGTTCGAGAACCGTGCTCCGCTGGCCCTCGGCAGCCGCGCCCTGCGCCTGCTGCGCAGCGAGGACGGCCTGAGCGA
Amino Acid Sequence
>type VI secretion protein
MKAIRLVAALSLVLLAACSKDTPVAPAADSAPDSAAVTLYFSAAEGLNPGPGGTPAPVRVRLYELKNSAAFARADYFALAERAQATLGADLIDQDEVLLQ PGGQLRVERPLDPATRHIGLVVGYREIDQAQWRSVLPVPPRDYQISLDVRAVRSAVATPQPEPAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site