Pseudomonas putida KG-4, V520_RS19060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00021, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAATACCCACCATTCACTCACAAAGTACGCACAAGTTATCCACAGGCGCTCGCCTTGCAAAGCCCCCGATACCGCATTATCTTGTATCCCGATCGCAGC GAACCACTAGATATAGGGGTTCGTGCAAAATCACACATAAAAGTCAACCCGCAAAATCAAGCGATTTTTTCGGGTGAACTTCAAGTGATTCCAGCAGCCA AACCGCTCCTGCGGAGGCGACCGAGGCAAGCCCTTGCAGGGCCTTGTTCGGGTATGGGTGTTACAGGCCAGGCCTGGTACCCATCAGCAACAGTTTTTGG GCCCGGCCCAGAACCTTTGACTTCGGCCAGGGAGCGGCGAGCCAATTGCCCTTATTCCTGAGTCTGTCCCGAAGTTGGTACGCCCGCGCGGGCGGATGCG CATGCATTGCCCATCCCCGCCAGGCCATCGAGCAAGTGGACGGAACGGTGGGCGCCCAAAAGGCGCCTGAACAATATAGAAACTGTGGAGACACCCACTC
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| DNA Sequence for Gene |
>V520_RS19060
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGCCAAGGTGCCGCAGGCCGCCGATTCCAACCAGGATCTGGCCGCCACCGCTCCCGGCCAACTGCGTG TGATCAAGCGTAACGGCACTGTCGTCCCCTACACCGACGACAAGATCACCGTGGCCATCACCAAGGCGTTCCTCGCAGTTGAAGGCGGCACCGCCGCCGC TTCGTCGCGCATCCACGACACCGTCGCGCGCCTGACCGAGCAGGTCACCGCCACGTTCAAGCGTCGCATGCCATCGGGTGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAGGTCGCCCGTGACTACGTGATCTACCGCGAGCAGCGCGCCAAGGAGCGTGCCA CCCGCGTCAACACCGAGTCCGTGGTCGAGCCGCACCCAAGCATCCGCATCACCCTGGCCGACGGCAGCCTGGCGCCGCTCGACATGGCCCGCCTGAACAC CATCATCAGCGAAGCCTGCGAAGGCCTGGCCGAGGTCGATGGCGACCTGATCCAGCGCGACACCCTGAAGAACCTGTACGACGGCGTGGCCATCAAGGAC GTCAACACCGCCCTGGTGATGACCGCCCGTACCCTGGTCGAGCGCGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGCGCCG AAGGCCTGGGCTTCCTGAACGTGGCCGAGAGCGCCACCCACCACGAAATGGCCGACCTTTACGCCAAGGCCCTGCCGGCCTACATCGACAAAGGCGTCGA GTTCGAGCTGCTGGACCCGGCCCTGAAAGGCTACGACCTGGACCGCCTGGGCAAGGCCATCGACCACGAGCGTGACCAGCAATTCACCTACCTGGGCCTG CAGACCCTGTACGACCGCTACTTCATCCACAAGGATGGCGTGCGCTTCGAGCTGCCGCAGGTGTTCTTCATGCGTGTGGCCATGGGCCTGGCACTGGCAG AAAAAGACAAGGAAGCCCGCGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGGCCTCGACCCCGACCCTGTTCAACGCCGGCACCCTGCG CCCGCAGCTGTCCAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGCTGTCGAAATTCGCCGGT GGCCTGGGCAACGACTGGACCCCTGTGCGTGCACTGGGCTCCTACATCAAGGGCACCAACGGCAAGTCGCAGGGCGTGGTTCCGTTCCTGAAAGTGGTCA ACGACACCGCCGTTGCCGTCAACCAGGGTGGCAAGCGCAAGGGCGCCGTGTGTGCCTACCTGGAAACCTGGCACCTGGACATCGAAGAATTCATCGAGCT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGTGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCTTCGGAAGTGCCAGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGACCGAGTACA ACAAGATCAAGGTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAGATGCTGTCGATGCTGTTCGAGACCGGCCACCCGTGGCTGACCTTCAAGGA CCCGTGCAACCTGCGTTCGCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCG GTCTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGCAACGCACCGTGAACACCGCCGTGCGCATGC TCGACAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGCGTAACTCGAACTTCAAGCACCGCCCGGTCGGCCTGGGCATCATGGGCTTCCAGGA TGCGCTGTACCTGCAGCACATTCCGTACGGCTCCGATGCTGCCGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTTCTACGCCATCCAGGCGTCC TGCGACCTGGCCGACGAGCGCGGTGCGTACGAGACCTTCCAGGGTTCGCTGTGGTCCAAGGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCGAGG CCCGTGGCGCCAAGTACATCGACGTCAACCTGGAAGAGTCCCTGGACTGGGCCCCGGTGCGCGAACGCGTCAAGAAAGGTATTCGTAACTCGAACATCAT GGCCATCGCGCCGACCGCGACCATTGCCAACATCACCGGCGTGTCGCAGTCCATCGAGCCGACCTACCAGAACCTGTACGTGAAATCGAACCTGTCGGGC GAGTTCACCGTGATCAACCCGTACCTGGTCCGCGACCTGAAGGCCCGTGGCCTGTGGGACTCGGTAATGATCAACGACCTGAAGTACTACGATGGTTCGG TGCAGCAGATCGAGCGTATCCCGCAAGAGCTGAAGGACCTGTACGCCACCGCGTTCGAAGTCGAGACCAAGTGGATCGTCGATGCCGCCTCGCGTCGCCA GAAGTGGATCGACCAGGCCCAGTCGCTGAACCTGTACATCGCCGGCGCCTCGGGCAAGAAGCTGGACGTCACCTACCGCATGGCCTGGTACCGTGGTCTG AAGACCACCTACTACCTCCGTGCCCTGGCTGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTCAACGCCGTTTCCAGCGGTGGCGACAGCG CCCCGGTCCAGGCAGCGGGCCCAGCGCCAGTGCCGAAGGCCTGCGCGATCGACGAGCCTGACTGCGAAGCCTGCCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCTGAGTGCCGCGCAGAGTGCCCATGGGCGCCCTGCGCGGCATTTTTGTATCTGCGCCACGGAGAAACCTTGCCCTTTGCCCACTGCTCGCGCAGCTC GGTAAAAGGACAGGACCTCTCAAAAAGGACTAAGCCCATGGCGCGGAAAAAACTGGCAACTCGCAAGATTGGTCGCAACGCGGAAACCGGCCGCTTCACC TCGGTCGAAGAAGCACGCAGGCATCCCAAGACACACATTGTCGAAACGCTGCACCACCCACGCAGCTAGTGGTTGCCTGGCTTGGCCTCATCGCCGGCAA GCCAGCTCCCACAGGTACTGCATCGCCCCCCCGGCCTGACGCTGAATCTGTGGGAGCTGGCTTGCCGGCGATGAGGCTAGGTCAGACAACACAAAACCCA TTAAAACACCATATGATGTGCCTTAAATTTAAACTGGCACAACATATAGGTTAGCGCTAAACTCTTCCCCCGTAGAAAACTACACAAGATTTCGTGAACG
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQAKVPQAADSNQDLAATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYREQRAKERATRVNTESVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRDTLKNLYDGVAIKD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYIDKGVEFELLDPALKGYDLDRLGKAIDHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQVFFMRVAMGLALAEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQAS CDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLEESLDWAPVRERVKKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTINTGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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