Pseudomonas putida KG-4, V520_RS18655
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00020, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTGCTGACGACCTTGGCCGCCGGCTTGACCTCGGCCACGGTAACTGCCGGCTCTGCTGCCGCCTTGGCGGTCTTGCGCAGTTCAGCCAGCGATGGGCTC TTGCTCTTGGCGACAGCTGCCGCCTCGGGTTTGCTCAGCGAACGCTGGCAGGATTTGCAGGATACGTCCTCGGTCACGGCAGTGCTGACAAGGGTCTGAC TGCTGCGCCCGCAGGCGGAATCGAGGCCATTGGAGGAAAAGTGAGTAACCAAAACCGAACATCTCCGATGCGTTGTCATTTGAAGCGGGCGCTATTCTCG CACAGGTTGCAGGGGCTTGCCGAACCACCGGGCAGGCACCACCGGTCATATTGGCTGGCACTTTGCCATAATCCTAGGCATGCTAGCTCGTTTGGGGTGT CCGGCCTTATAGTGCGCCACCGCGGTCTGGCAACCAGACACCGGTACACACCGTGCATGATCCATACCTGCCATCGCCAGCTCAATCGCAGGATCAACGC
|
|
| DNA Sequence for Gene |
>V520_RS18655
TTGACCAATCTTACTCATCCGTCGTCATTGCGTTCCGCGCCACAGGCGCCCGTCGCGTCGCTGCGCGGGTCGATAAAGGGTGCGCTGGCGCTGCTGGCCC TGATACTGCTGGGCCTGCTGCTGTGGCAGCTGTTCGCCCAGTTCAACCATACCCAGGCCGACCTGCGCAAACAGAGCCTGGATGCCACCGCCGAACTGGC AGACCACCTGAGCCTGAACATGGCCTTCAAGGCCCAGCAGGCCATGAATGTGGTGCAGCCCTACGTCAAGGCGCCGACGCCCTCGGCCCTGCCCAGCCTG CTGGGTACCCTGCGCGAGCGCCTGCCGGCCCTGCAAAGCATGGCCTGGCTGGACGCTACCGGGCAGGTGCAGGCCGACAGCCTGGCCGGCAGCCCCGACC GCCATTTGCTTGACGAGCTGCTCAGGCTAACCCAGGGCAGCCCGTACTTCTTCACCAATTCGGAAGACAACAGCACCCTCTACCTGCTGCTACGCCAGGC CACCGAGCAAGGCCGCGGCTACTGGCTGCTGCGCCTGTCGCCAGACTACTACCGCACCCTCACCTTCCACCTGGATGGTGCCGGCCACCCGCTTTGGTTG CTGGAAAACAGCCGCAACGGCGAGGTACTGCAAAGCCATGCCCCAGCCGATACCAGCAACGAGCCGCTGCAAAGCGTGATGCTGGCCTTCCTCGACAACA GTACCTGGCAGTTGCGCGGCCTGTTCGACGCCAAGCTGGCCCAGCAGAAGCTGCTGCCGGCGCTGCTCGGCAAATGCCTGCTGGTGCTGTTCTGCGCCCT GCTGCCAGTGCTGGCCCTGATCAACATGCGTCGCCGCCAACGGGCGCTGCAGGAGGACCGCCGGCGCTACCAGGAAATCTTCGAAGGCACCGGCGTGGCC TTGTGCGTGCTCGACCTGTCCAGCCTGCCCGGCCAACTCGACCGGTACCACCTGCGCAACCGTGCCGCGCTCAAGCAAAGCCTGGCCCTGGACCCCAACC TGCGCCGCTCGCTGCTGCTGGAGCTGAAGATCACCGAGATCAACCAGGTGGCCCGCCAGTTGTTGAACATCGACTGCCACGAAGGTGCCTGGCAGCGCCT GATCGACGGCACTGGCGATGGCCGCGACAGCATCGGCATGCAGCTGATCGACGCGCTGATCGAGCAGCGCCCGCTGCTGGAGCTGGAAGTGCGCCTGCCG GCGCCGCTGGGTGGCGAGCTGCACCTGTGGCTGATGGCCCGCCTGCCGCAGCAGCGCCGCGATTACCAGGCAGTCATCCTCAGCATCAGCGACATCACCA GCCGCAAGCAGGTGGAGCTGTCGCTGCTGGAGCGCGAAAGCTTCTGGTCGGACGTGGTGCGCACCGTGCCCGACCAGCTGTACGTGCAGGACGTGCTCAG CCAGCGCATGATCTTCAGCAACCGCCACCTCGGCCAGACGCTGGGCTACGACCGTACCGAGCTGGCGCAGATGGGCGACCGCTTCTGGGAGCTGCTGCTG CACCCCGAGGACGCCGCGCACTACCAGGCACTGCGCCAGCAACAGCGCGACAGCGGCCATGACCAGCCCTTGCACTGCCAGCTGCGCTTCCGCCACCGAG ATGGCGGCTGGCGCTGCTATGACATCCGCGAGCAAGTGCTGACCCGTGACGCCGATGGCCTGGTGACGCGCATCATCGGCGTGGGCAAGGACGTGACGGT GCAGATTGAGGCCAGCCAGTCGCTGCGCGACAGCGAACAGCGCTACCGCATGCTCGCCGAAAGCATAAGCGACGTGATCTTCTCTACCGACAGGCTGCTC CAGCTCAACTACGTCAGCCCCTCGGTGAAGGGCGTGCTGGGCTACCAGGCCGACTGGATCTTTGCCAATGGCTGGCAGTCGATCGTCGCCAACCCGTCGC AGCTCACCGGTATCTACAGCCTGATGGAGCGCGTCAGCAAGGCCATGGGCGACCCGGCCCAGCTGGCCCAGCTGCGCAGCCAGCTGCCCACCCAGCTGTT CCTGTTCGACTGCCTGCGCGCCGATGGCCGCAAGATCCCCATCGAACTGCGCCTGGTGCTGGTATGGGACGATGAAGAGCGCTTCGAAGGCGTGCTCGGG GTAGGCCGCGACATCAGCCAGCAACGCCGCGCCGAAAAAGACCTGCGCATGGCCGCGACGGTATTCGAGCACTCCACCTCGGCCATCCTCATCACCGACC CGGCCGGCTATATCGTCCAGGCCAACGAAGCGTTCAGCCGCGTCAGTGGCTACGCCGTCAGCGAGGTGCTCGACCAGTTGCCGGGCATGCTTACCGTCGA CGAACAGCAGGAAGGCCACCTGCGCTACGTGGTCAAGCAGCTTTACCAGCGCGGCAGCTGGGAGGGCGAGGTGTGGCTCAAGCGCCGCGACGGCGACCAT TACCCGGCCTGGGTCGGCATTACCGCGGTGCTGGACGACGAAGGCGACCTGGCCAGCTACGTGTGCTTCTTCACCGACATCAGCGAACGCAAGGCCAGCG AACAGCGCATCCATCGCCTGGCCTACTACGACGCCCTTACCCACCTGCCCAACCGCACGTTGTTCCAGGACCGCCTGTACAACGCCCTGCAGCAGGCCGA GCGGCAAAAGGCCTGGGTGGTGCTGATGTTCCTGGACCTGGACCGTTTCAAGCCGATCAACGATTCCCTCGGCCATGCTGCCGGCGACCGCATGCTAAAG GACATGGCCCAGCGCCTGCTGGCCTGCGTGGACAACGACGACACCGTGGCGCGCATGGGCGGCGACGAGTTCACCCTGCTGCTGCAACCGCGCGCTACCC GTGAGATGGCACTCAACCGCGCCATCCACGTGGCCGAGAACATCCTCGGCAGCCTGGTGCGGCCGTTCGTACTGGAAAACCGGGAGTTCTTCGTTACCGC CAGTATCGGCATCGCCCTCAGCCCGCAGGATGGCAGCGAGCTGAGCCAGCTGATGAAAAACGCCGACACCGCCATGTACCACGCCAAGGAGCGTGGCAAG AACAACTTCCAGTTCTACCAGGCGGAGATGAACGCCAGTGCCCTGGAGCGCCTGGAGCTGGAGAGCGACCTGCGCCATGCCATGGAGCAGAACGAGTTCA TCCTCTACTACCAGCCGCAGTTCAGCGGCGACGGCAAGCGCCTGACCGGTGCCGAAGCCCTGCTGCGCTGGCGCCACCCGACCCGCGGCCTGGTGCCGCC GGGCGATTTCATCCCGGTGATCGAAGAGCTGGGCCTGGTGGTGGACGTGGGCGACTGGGTGCTGCGCGAGGCCAGCCGCCAGCTCAAGGCCTGGCACAAG GCCAAGGTGCGCGTACCCAAGGTGTCGGTGAACATCTCGGCGCGGCAGTTCTCCGACGGCCAGCTGGGTACGCGCATCGCAACCATACTGGAAGAAACCG GCCTGCCACCCGCGTGCCTGGAGCTGGAGCTGACCGAAAGCATCCTGATGCGCGAAGTGAACGAAGCCATGCAGATTCTCGCCAGCCTGAAAAACCTCGG CCTGAGCATTGCGGTGGACGACTTCGGCACCGGCTACTCGTCGCTGAACTACCTCAAGCAGTTCCCGATCGACGTGTTGAAGATCGACCGCACCTTCGTC GACGGCCTGCCTGAAGGCGAGCAGGATGCGCAGATTGCCCGGGCGATCATCGCCATGGCCCACAGCCTCAACCTGGCGGTAATTGCCGAAGGGGTGGAAA CCCACGAACAGCTGGAGTTCCTGCGCGAGCATGGTTGCGACGAGGTGCAGGGCTACCTGTTCGGGCGGCCGATGCCGGCGAACCAGTTCGAGGCGCAGTT CGCCAACGAGAAGCTGTTCATGTTCCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCGACGCCTCCTGGCGCGCGCGGACAATTGTAGGAGCGGCCTTGTGTCGCGAAAGGACCGCAACGCGGTCCCGACGATTTCGGCGGCAAGGCTGCAAT CGTGGGGCCGCTGCGCGCCCCTTTCGCGACACAAGGCCGCTCCTACAGGGACCGCGCTCTGGCAGAGAAGCGCGCCTGTAAAAACGGACCTGCGAGTCAA CTCCAACCCCCGCCCAGCCCAGACACGGCGCGGGATGCAACATGAAGCCCATTGGTCCGCGACTTGATGCCACTTCATATGCCAGCCGCGAATCAATCGG TTAGAATGCCCCCCCAATTCACCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACCATTGCCAAGTACGACGCCGAGCTCTTCGAAGCCATGC AGCAAGAAGCTCTGCGCCAGGAAGAGCATATCGAGCTGATCGCTTCGGAAAACTACACCAGCCCGGCAGTCATGGAGGCCCAGGGCTCGGTCCTGACCAA
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MTNLTHPSSLRSAPQAPVASLRGSIKGALALLALILLGLLLWQLFAQFNHTQADLRKQSLDATAELADHLSLNMAFKAQQAMNVVQPYVKAPTPSALPSL LGTLRERLPALQSMAWLDATGQVQADSLAGSPDRHLLDELLRLTQGSPYFFTNSEDNSTLYLLLRQATEQGRGYWLLRLSPDYYRTLTFHLDGAGHPLWL LENSRNGEVLQSHAPADTSNEPLQSVMLAFLDNSTWQLRGLFDAKLAQQKLLPALLGKCLLVLFCALLPVLALINMRRRQRALQEDRRRYQEIFEGTGVA LCVLDLSSLPGQLDRYHLRNRAALKQSLALDPNLRRSLLLELKITEINQVARQLLNIDCHEGAWQRLIDGTGDGRDSIGMQLIDALIEQRPLLELEVRLP APLGGELHLWLMARLPQQRRDYQAVILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELLL HPEDAAHYQALRQQQRDSGHDQPLHCQLRFRHRDGGWRCYDIREQVLTRDADGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDRLL QLNYVSPSVKGVLGYQADWIFANGWQSIVANPSQLTGIYSLMERVSKAMGDPAQLAQLRSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDEERFEGVLG VGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLYQRGSWEGEVWLKRRDGDH YPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK DMAQRLLACVDNDDTVARMGGDEFTLLLQPRATREMALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGK NNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHK AKVRVPKVSVNISARQFSDGQLGTRIATILEETGLPPACLELELTESILMREVNEAMQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFV DGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPANQFEAQFANEKLFMFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|