Pseudomonas putida KG-4, V520_RS14645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00012, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGGGTCGGGCACGTGCTCGAGCATTTCCAGGCAGGTGACCACGTCGAACTGTTCAGGCATTTCCTCGGCCAGGGCTTCGGCGGTGATCTGCCGGTATT CCACCTGCACGCCCGACTCCAGCTGGTGCAGCTGGGCCACCGCCAGTGGCGCCTCGCCCATGTCGATGCCGGTGACCGTGGCGCCGCGCAGGGCCATCGC CTCGCTGAGGATGCCGCCGCCGCAACCCACGTCCAGCACTTTCTTGCCGGCGAGGCTGGCGCGCTCGTCGATCCAGTTGACGCGCAGCGGGTTGATTTCG TGCAGCGGCTTGAACTCGCTTTCGCGGTCCCACCAGCGGTGGGCCAGCGCTTCGAACTTGGCGATTTCGGCGCGGTCGACGTTGCTCATTAGAACAGTCC TCTGAAACTTCGCAAAATTGCGCCGGAGTATACCCGAGCGCTCGGCCCCGAGGGTCGCTATAATCGCCGGCTTTTGATATCCGAACGACGGGGAGAGGCG
|
|
| DNA Sequence for Gene |
>V520_RS14645
ATGCGCGAGCGACTTTTGGCGGCGGAGAAGGTGACCGGGATCCGCTGGCAGGGCGGCGTCTTGCACCTGCTCGACCAGCGCCTGCTGCCGTCGGAAGAGC GCTGGCTGGCCTGCGACAATGTCGCGCAGGTGGCAGTGGCGATCCGCGACATGGCCGTGCGCGGCGCCTCGGCCATCGGCATTGCCGCGGCCTATGGCCT GGTGCTGGCCCTGGAAGAGCGGCTGGCCGAGGGCGGCGACTGGGAAATGGACCTGGAAGAAGACTTCCTCGTCCTGGCTGAAGCGCGCCCTACCGCCGCC AACCTGTTCTGGGCGCTGAACCGCATGCGTGAGCGCCTGCAGCGGCTGCGTCCGGACGAAGGCGTGCTGGCGGCGCTGGAGGCCGAAGCGGTGGCCATCC ATGAAAGTGACCGCGAAGCCAACCTGACCATGGCCCAGCACGGTATCGAGCTGATCCGCCGCCACCAGGGCAACGCCCAGGCCCTGCTCACATACGGTAA TGCCGGCGCCCTTGCCTGTGGTGGCTTCGGTACCGCCCTGGGGGTGATCCGCGCCGGTTACCTGGAGGGCATGGTCGAGCGGGTGTATGCCGGCGAGACC CGCCCCTGGCTGCATGGTTCGCGCCTGACTGCCTGGGAACTGGCCAACGAAGGCATCCCGGTGACCCTGTGCGCCGACTCGGCGCTGGCCCACCTGATGA AGGTAAAGGGCATTACCTGGGTGGTGGTGGGGGCGGACTGCATCGCCGCCAACGGCGACGTGGCCGGCAAGATCGGTACCTACCAGCTGGCAGTCAGCGC CATGCACCACGGCGTGCGATTCATGGTGGTGGCGCCGAGCACCAGCATTGACCTGAACCTGGCCACGGGCGAGGACATCCTGCTGGAAGAACGCGCTGCC GACGAGTTGCTGGACATTGGCGGCACCCGGGTGGCGCCGGATGTGGAGGTGTTCAACCCGGTATTCGATGTGACCCCGGCCGACCTGATCGATGTGATCG TGACCGAGCGCGGTATCGTCGAGCGGCCGGATGCCGCCAAGCTGGCACAATTGGTCTGCCGCAAGCGCCTGCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGGAAACCTCGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACACCACCACTCTCGAGTGTTGCGATATCCCTGTGGGAGCGGGCGTGCCCGCG AAGAAGCGAGTGAAAATCCGAAGATTCAACCTCGTGTGAGGCCACCTGCCACATCTCCACACCGCCCCTGCCTTTGTGATAATATCCGGCAGTTTCCAAG ACCGCCCACCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGTTGCGGCGGCGAGCTTCGT TCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGA ACTGAGACAGTCCTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCTTGAAGCCCGTGCATCGTCGCGTTCTC
|
|
| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRERLLAAEKVTGIRWQGGVLHLLDQRLLPSEERWLACDNVAQVAVAIRDMAVRGASAIGIAAAYGLVLALEERLAEGGDWEMDLEEDFLVLAEARPTAA NLFWALNRMRERLQRLRPDEGVLAALEAEAVAIHESDREANLTMAQHGIELIRRHQGNAQALLTYGNAGALACGGFGTALGVIRAGYLEGMVERVYAGET RPWLHGSRLTAWELANEGIPVTLCADSALAHLMKVKGITWVVVGADCIAANGDVAGKIGTYQLAVSAMHHGVRFMVVAPSTSIDLNLATGEDILLEERAA DELLDIGGTRVAPDVEVFNPVFDVTPADLIDVIVTERGIVERPDAAKLAQLVCRKRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|