Pseudomonas putida KG-4, V520_RS14640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00012, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGCGCCGGATGTGGAGGTGTTCAACCCGGTATTCGATGTGACCCCGGCCGACCTGATCGATGTGATCGTGACCGAGCGCGGTATCGTCGAGCGGCCGG ATGCCGCCAAGCTGGCACAATTGGTCTGCCGCAAGCGCCTGCACTGATCGGAAACCTCGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACACCA CCACTCTCGAGTGTTGCGATATCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCGAGTGAAAATCCGAAGATTCAACCTCGTGTGAGGCCACCTGCCACA TCTCCACACCGCCCCTGCCTTTGTGATAATATCCGGCAGTTTCCAAGACCGCCCACCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGAT TTGTCGTAAGTCGTCGCACCCTTATGCGTTGCGGCGGCGAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>V520_RS14640
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAACTGAGACAGTCCTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGC TGCCCGATGCGCGTGACGGCTTGAAGCCCGTGCATCGTCGCGTTCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGC CCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACCGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGCTGCGCTAC CTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCCGCCGCCATGCGATACACCGAAGTGCGCATGGCCAAGCTGGCCCACGAGC TGCTGGCCGACCTGCACAAGGAGACCGTCGACTGGGTGCCCAACTATGACGGCACCGAGCAGATCCCGGCGGTCATGCCGACCCGTATTCCCAACCTGCT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCGACCAACATCCCGCCGCACAACCTCGGCGAGGTCATCGATGGCTGCCTGGCGCTCATCGACAAC CCCGAAGTCACCATCGATGAGCTGATGCAGCACATCCCTGGCCCGGACTTCCCGACTGCAGGCCTGATCAACGGCCGTCAGGGCATCATCGAGGCCTATC GTACCGGCCGGGGTCGCATCTACATGCGTGCCCGCTCCGAGGTCGAAGACATCGACAAGGTCGGTGGCCGCCAGCAGATCGTGATTACCGAGCTGCCGTA CCAGCTGAACAAGGCTCGCCTGATCGAGAAGATCGCCGAGCTGGTCAAAGAGAAGAAGATCGAAGGCATCACCGAGCTGCGCGACGAGTCCGACAAGGAC GGCATGCGCATCGTCATCGAGCTGCGCCGTGGCGAGGTGCCGGAGGTGGTGCTCAACAACCTCTACCAGCAAACCCAGCTGCAGAGCGTATTCGGCATTA ACGTGGTGGCCCTGGTCGACGGCCGTCCGCGCCTGCTCAACCTCAAGGACCTGCTCGAAGCGTTCGTGCGTCACCGCCGTGAAGTGGTGACCCGCCGTAC CGTGTTCGAGCTGCGCAAGGCCCGCGAACGCGGCCATATCCTTGAAGGCCAGGCGGTCGCGCTGTCCAACATCGACCCGGTCATCGCCCTGATCAAGGCC TCGCCGACCCCGTCCGAAGCCAAGGAAGCCCTGGTTTCCACTGCCTGGGAATCCAGTGCCGTGCAGGTCATGGTCGAGCGTGCCGGCGCCGACTCCTGCC GCCCCGAGGACCTGCCGGACCAGTACGGCCTGCGTGAAGGCAAGTACTACCTGTCGCCGGAACAGGCCCAGGCCATTCTCGACCTGCGCCTGCACCGCCT GACCGGCCTGGAGCACGAGAAGCTGCTGGCCGAGTACCAGGAAATCCTCGAGCAGATCGGCGAACTGATCCGCATCCTCAGCAGCGCCGAGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGCTATCCGCGCCGAATATGGCGATGCCCGCCGTACCGAAATCCTCGATGCGCGCCACGACCTCAACTACGGCGACA TGATCCCGGAAGAAGAGCGCGTGGTGACCATCTCCCACGGCGGCTACGCCAAGACCCAGCCGCTGTCCGCCTACCAGGCCCAGCGCCGGGGCGGCAAAGG CAAGTCGGCTACCGGGGTGAAGGACGAGGACTACGTCGAGCACCTGCTGGTTGCCAACAGCCACGCCACCCTGCTGCTGTTCTCCAGCAAGGGCAAGGTT TACTGGCTGAAGACCTACGACATCCCTGAAGCGTCCCGCGCCGCCCGCGGTCGCCCGCTGGTCAACCTGTTGCCGCTGGAGGAAGGTGAGCGCATCACCG CCATGCTGCAGATCGACCTCGAGGCCCTGCAGCAGAATGCTGACGCCGACGAAGAGCTGGAGGACGCGGAAGACACCGTGCTCGAAGGCGAAGTGGTCGA GGCCGAGGAAGTGGACGAGGAAGACGGCGATACCCCTGAGTGGGTGGCCGAGCCGACCGGCGCCTACATCTTCATGGCCACCGCTTCGGGTACCGTGAAG AAGACCCCGCTGGTGCAGTTCGCCCGTCCGCGCTCCAACGGCCTGATCGCCCTGAAGCTGAAGGAAGGTGACACCCTGATCGCTGCGGCCATCACCGACG GTGCCAAGGAAGTCATGATGTTCTCCGACGCTGGCAAGGTGATCCGCTTCGCTGAAAGCGTGGTGCGCGAGATGGGCCGTAACGCCCGTGGCGTGCGCGG CATGAAGCTGGGCAAGGGCCAGCAGATCATCTCCATGCTGATCCCGGAATCCGGCGCGCAGATCCTCACTGCCTCCGAGCGTGGCTTTGGCAAGCGCACC CCGCTGTCCAAGTTCCCGCGTCGCGGCCGTGGTGGCCAGGGCGTGATAGCCATGGGCACAAAGGGGCGCAATGGCCTGCTGATCGGCGCCATCCAGGTGC AGGAAGGCGAAGAGATCATGCTGATTTCCGACCAGGGCACGCTGGTGCGTACCCGCGTTGGTGAAGTGTCCAGCCTGGGCCGTAACACCCAGGGCGTGAC CTTGATCAAGCTGGCTGCCGACGAGACGCTGGTGGGCCTGGAGCGTATCCAGGAGCCTTCCGAGGACGAACTCGATGATGTGATCGAGGCGGACGAAGAG GGCGTCGAGGCTGAAGCGCCAGACAACGAAGAAGCTGCTGGCGCCGAAGAGGCCCCGCAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGCGTAAAACCCGAACGGGGCGACCAAGGTCGCCCCGTTTGACTGATCAGGCCAGGTCATTGGGGCCGCTGTGCGGCCCATCGCCGGCAAGCCGGGC TCCCACAGGTCCGGCGCGAGCTTTGAGGTTTGTGCGGTCCCTGTGGGAGCTGGCTTGCCGGCGATGGCCTGCAAAGCAGGCCCATGGCAGGCGACACAGT CTTGACGGGTCGGCACCGAATTAAGATTTTGTACCATTTGGCAGAGCGAGAGTGGATGTGAGCAAACGAGCCTTTAACTTCTGCGCAGGCCCTGCTGCGC TTCCTGACGCTGTTCTGCAGCGCGCTCAGGCCGAGATGCTGGACTGGCGTGGCAAGGGCTTGTCGGTGATGGAAATGAGCCATCGCAGCGACGACTACGT GGCCATCGCCGAAAAGGCCGAGCAGGACCTGCGTGACCTGCTGTCCGTCCCCTCCAACTACAAGGTGCTGTTCCTGCAGGGGGGCGCCAGCCAGCAGTTC
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PEVTIDELMQHIPGPDFPTAGLINGRQGIIEAYRTGRGRIYMRARSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKD GMRIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALVSTAWESSAVQVMVERAGADSCRPEDLPDQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILSSAERLM EVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKV YWLKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADADEELEDAEDTVLEGEVVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVK KTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKLGKGQQIISMLIPESGAQILTASERGFGKRT PLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLAADETLVGLERIQEPSEDELDDVIEADEE GVEAEAPDNEEAAGAEEAPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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