Pseudomonas putida KG-4, V520_RS13660
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00011, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACGCAGCCTGCAAGGTGGCACCACCCATTGGCTGCGCCCGCGCCTGCTGGGCTACGCTGCCGCGCTGGGGGTGATGATCGCGGCGCTGGTGGTGGCCT TGCAGCTGCGCCCGATGGTGTCGCTGGACGTGATCAAGGACCGCGGCCTGTTCCGCGAGAATGCCCAGGGCCAGATCGAGAACATCTACCTGCTCAAGGT CATCAACAAGACCGAAAGCACCCGGCACTACGAGCTGCGCCTGCTGGACGCCGACGGCTTCAGCCTGCAAGGCAAGACCTCATTCATGATCCCGGCCGGT GAAATGAGTGAACTGCCGGTGTCGGTGGCGATGCTCGCCGAGCGCCCGGCCAGCAGCTCGCAGACGCTGAGCTTTGAAATCAGCGAGCGCGACGACCCCA GCATCCGCAGCATGGCCCACAGCCGCTTCGTCGCACCGATGAACCGTTGATCCCTTACACTGATTCCACCTTGCCTGCCAGGCTTCGACAGAAGGCCAGA
|
|
| DNA Sequence for Gene |
>V520_RS13660
ATGAAACGCTACGAACGCTTTGCCGACGACATCGCCGAACTGATCCGCTCTGGGGTGCTGGGCCCCGGCCAGCGCGTACCCTCGGTGCGCTATGCCAGCC AGACCCACGGGGTCAGCCCGTCCACGGTGTTCCAGGCCTACTACCTGCTGGAGCGGCGCGGGTTGATCCGTGCCCGGCCGCGCTCGGGCTATTTCGTCAA CGCCCACGCCCCGCGCCAGTTCAGCGAGCCGCAGGCCTTGCAGCCGGTCAGCGAATCCACCGACGTCGACGTCAGCGCGCTGGTGTTCTCGATCCTCGAC TCGATCAAGGACCCAAACACCGTGCCGTTCGGCTCGGCCTTCCCCAGCCCCGAGCTGTTTCCGCTGCAACGCCTGGCGCGCTCGCTGGCCAGCGCCAGCC GCAGCATGGACCCGCGCATGGTGGTGACCGACCTGTCACCCGGCAACCCGCAGCTGCGCAGGCAGATTGCCCTGCGCTACATGGTCGGCGGGCTGATGCT GCCGATGGAGGAGCTGCTGATCACCAACGGCGCGCTGGAAGCCTTGAACCTGTGCCTGCAGGCCGTCACCCAGCCCGGCGACCTGGTGGCCATCGAAGCC CCCGCCTTCTATGCCTGCCTGCAGGTACTGGAGCGGCTCAAGCTCAAGGCCGTGGAAATCCCTGTGCACCCGCGTGAAGGCATGGACCTGGGTGTGCTGG CGCAAACGCTGGAGAAGCACCCGGTCAAGGCCGTGTGGTGCATGACCAACTTCCAGAACCCGGTGGGCGCCAGCATGCCGGAGGCGAAAAAGCAGGCACT GGTGGAGCTGCTGACGCGTCATCAGGTGCCATTGATCGAAGACGACGTGTACGCCGAACTGTACTACGCGCAACAGGCCCCCAAACCGGCCAAGGCCTTC GACACCCAGGGCCTGGTGATGCACTGCGGCTCGTTCGCCAAGAGCCTGGCACCCGGCTACCGCATCGGCTGGGTGGCAGCCGGGCGCTTTGCGCAGAAGA TCGAACGGCTCAAGCTGATGACCTCGCTGTGTGCCTCGATGCCGGCCCAGGCGGCCATCGCCGACTACCTGCAGCACGGTGGCTACGACCGCCACCTGCG CAAACTGCGCTATGCCCTGGAAGGCCAGCAGGCCAACATGCTGGCGGCCATTGCCCGGCATTTCCCGGCGCAGACGCGGGTCAGCCAACCGTCCGGCGGC TACTTCCTGTGGCTGGAGCTGCCCGAACAGATGGACGCCCTCAAGTTGTTCCACATGGCCCTGGCCCAAGGCATCAGCATCGCCCCCGGGCCGATCTTCT CGCCCACCCGGCGCTTCGGCAACTGCATCCGCCTGAACTACGGCAGCCCCTGGCACGAGGATGCCGAACGGGCCATGGAAACCCTGGGGCGGATCATCCG CTCGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGCTGGTGCCCCGGTGGGCGACTATAGTTGCCCGATACGCTCACCGGGCCCTCGCCATGCAAGCAGATTCGCTCCCGTCATTGGCACAGCTGCAAGCGC GTGTCGCAGAACTGGAAGCGCGCCTGGCCAAGCGCGACGACACGGTACAGGCCCATATCCAGCTGCTGGGCGAGCTGCTCGACAACAGCCTGGCCAACGT GTTTGCTGCCGACCGCAGCATGCGCCTGATAGCGATCAACCGCACGGCCCGGGAAACCTTCGAGCGTTACCGTGGCTTCGTGCCGCAGATCGGCGATTAC GTGCCACAGTTCCTGATCAACCAGCCTGACATCATGGGCCGCCTGGCACCGGTGTGGCCACGCGTGCTGGCCGGCGAAGCCTTCATCGACACCATCACCC TCGGCCCGCCCGACGCCCCCCGCCACTACGAGATTCGCTACCACCCGTTGCACGATGCGCAACAGCAAGTCCAGGGCGGGTATCTGTTTGCCTATGACAT
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYERFADDIAELIRSGVLGPGQRVPSVRYASQTHGVSPSTVFQAYYLLERRGLIRARPRSGYFVNAHAPRQFSEPQALQPVSESTDVDVSALVFSILD SIKDPNTVPFGSAFPSPELFPLQRLARSLASASRSMDPRMVVTDLSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTQPGDLVAIEA PAFYACLQVLERLKLKAVEIPVHPREGMDLGVLAQTLEKHPVKAVWCMTNFQNPVGASMPEAKKQALVELLTRHQVPLIEDDVYAELYYAQQAPKPAKAF DTQGLVMHCGSFAKSLAPGYRIGWVAAGRFAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEGQQANMLAAIARHFPAQTRVSQPSGG YFLWLELPEQMDALKLFHMALAQGISIAPGPIFSPTRRFGNCIRLNYGSPWHEDAERAMETLGRIIRSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|