Pseudomonas putida KG-4, V520_RS13240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00010, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACTACCGCATGACGCGGCCTTCTTCATTGCCCAGCGTATCCGCTCCAACGTCCGTGAACTGGAAGGTGCATTGAAGCGGGTGATCGCTCACTCGCAC TTCATGGGCCGCGACATCACTATCGAACTGATTCGTGAGTCGCTCAAGGATCTGCTGGCGCTGCAGGACAAGCTGGTTAGTGTGGATAACATTCAGCGTA CCGTCGCCGAGTACTACAAGATCAAGATCTCCGATCTGTTGTCCAAGCGTCGTTCGCGTTCCGTGGCGCGTCCACGACAGGTGGCCATGGCCCTGTCCAA GGAACTGACCAACCACAGTCTGCCGGAAATCGGCGACATGTTCGGTGGTCGGGACCATACGACCGTGCTACACGCCTGCCGCAAGATCAACGAACTGAAG GAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGGACGCTGACGACCTGATGGCCGTCTGCGCAGCTAATTGAAGGCAAGGGACTAGACC
|
|
| DNA Sequence for Gene |
>V520_RS13240
ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCCGGTGTCGTCGAGCGCCGCCAGACCTTGCCGGTCCTGTCCAACGTAT TGCTGGTCGTGCAAGGCCAGCAACTGTCGTTGACTGGTACCGACCTGGAAGTCGAACTGGTAGGCCGCGTGCAACTGGAAGAGCCGGCCGAGCCTGGCGA AATCACTGTTCCGGCACGCAAGCTGATGGACATTTGCAAAAGCCTGCCGAATGACGCCCTGATCGATATCAAGGTCGACGAGCAGAAACTGTTGGTCAAG GCCGGCCGCAGCCGTTTTACCCTGTCGACCCTGCCAGCCAATGACTTCCCGACAGTGGAAGAAGGCCCGGGCTCGCTGACCTGTAACCTGGAACAAAGCA AGCTGCGCCGCCTGATCGAGCGGACCAGTTTCGCCATGGCCCAGCAGGATGTGCGCTATTACCTCAACGGCATGCTGCTGGAGGTTTCCCGCAACACCCT GCGAGCTGTGTCCACTGACGGTCACCGTCTGGCGCTGTGCTCCATGAGCGCACCGATCGAGCAGGATGATCGCCACCAGGTCATCGTGCCACGCAAAGGT ATCCTTGAACTGGCACGCCTGCTGACCGACCCGGAAGGCATGGTCAGCATCGTTCTGGGCCAGCACCACATTCGCGCCACCACCGGTGAATTCACCTTCA CTTCCAAGCTGGTCGACGGTAAGTTCCCGGACTACGAGCGCGTACTGCCCAAGGGCGGTGACAAGCTGGTGGTCGGCGACCGTCAGGCGCTGCGTGAAGC TTTTAGCCGTACTGCGATTCTTTCCAACGAAAAGTACCGCGGTATCCGCCTGCAACTGGCTGCTGGCCAACTGAAGATCCAGGCCAACAACCCTGAACAG GAAGAAGCTGAAGAAGAAATCAGCGTGGACTACGAAGGTAGCTCACTGGAAATCGGCTTCAACGTCAGCTACCTGCTGGACGTCCTGGGCGTAATGACTA CCGAGCAAGTTCGTCTGATCCTGTCCGACTCCAACAGCAGTGCCCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGTCT GTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGTAGCAGGCGAAATGTCTCTTCGACGTATCATGGTCACCGCGGTGCGCAATTTGCACCCGGTGACACTCTCACCGTCCCCCCGCATCAACATCCTTT ACGGCGCCAACGGCAGCGGCAAAACCAGCGTGCTTGAGGCCGTGCACCTGCTCGGGCTGGCGCGCTCGTTCCGCAGCACCCGCCTGAACCCGGTTATCCA GTATGAACAACCGGCCTGTACCGTGTTCGGTGAAGTGCAATTGGCCGAGGGTGGCAGCAGTAACCTGGGGGTATCCCGGGAGCGGCAGGGAGAATTCACT ATTCGCATCGATGGGCAGAATGCGCGGAGTGCGGCACAACTGGCTGAGTTGCTACCGCTTCAGCTCATCAATCCGGACAGTTTCCGCTTGTTGGAAGGCG CTCCGAAAATACGCCGCCAGTTTCTGGATTGGGGAGTGTTCCACGTGGAACCTCGTTTTCTGCCAGCCTGGCAACGGCTACAGAAGGCACTGCGGCAGCG
|
|
| Amino Acid Sequence |
>DNA polymerase III subunit beta
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVK AGRSRFTLSTLPANDFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSAPIEQDDRHQVIVPRKG ILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSYVVMPMRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|