Pseudomonas putida KG-4, V520_RS12635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGCGGTGGCGCTGAACCTGCGCGATGCCGCTGCCCTCGAGGTTGCGCTGGTGCAGATGCGCCAGCGCATCGCCGCCTATGCCCCGCAGGTAGCGTTC GACCAGGTGCTGCTCGAACCGATGGCCGAGCCGCCGCTGGCCGAATTGATCGTCGGCATCAAGCGCGAGCACGACTTCGCCCTGGCCCTGGTGATCGGTG CCGGTGGCGTGCTGGTCGAGCTGCTCAAGGACAGCGTCAGCCTGTTGTTGCCGACCACCGACGACGCCATCCGTAGCGCGCTGCTCGGCCTGCGCAGTGC CAGCCTACTGCAAGGCTTCCGTGGCCGCCCGGCTGCCGACCTCGACGCATTGGTTGCGGCTATCCGCGCGGTGGCCGACTACGCCTGCGAAAACGCCGGG CAATTACTGGAGCTGGATGTGAACCCATTGATGGTAGGTGCCCACGGCACCACTGCGGTCGATGCGCTGATCCGCCTCGGCCAGGCGCAAGGAGAACGAC
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| DNA Sequence for Gene |
>V520_RS12635
ATGAATAAGCACACCCCAACCGCCGGGCAGGCGTTGGTGCGCCTGCTGGCCAACTATGGCGTGGAAACGGTATTCGGCATCCCCGGCGTGCACACTCTGG AGCTGTACCGCGGTCTGCCGGGCAGTGGCATCCGTCATGTGCTGACCCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTATGCCCGGGTAAGCGG CAAACCGGGGGTATGCTTCGTCATCACCGGCCCGGGCGTGACCAATGCCGCCACGGCCATCGGCCAGGCCTATGCCGACTCCATCCCTATGCTGGTGATT TCCAGCGTCAACCACACTGCCAGCCTGGGCAAGGGCTGGGGCTGCCTGCACGAAACCCAGGACCAGCGCGCCATGACCGCGCCGATTACCGCGTTCTCCG CCGTGGCCCTGCGCGGCGACGACCTGCCCGAGCTGATCGCTCGTGCCTGGGCCGTGTTCGACAGCGAACGGCCGCGCCCGGTGCACATCTCGGTGCCGCT GGACGTGCTGGCCGCACCGGTCAGCCGTGACTGGAGCGATGAGGTGGTGCGCCGCCCCGGGCGCGGCCAGCCGTGCCGTGACATCCTCGACCAGGCTGCC GTGAAGCTGGCAGCCGCCAGGCGCCCGATGATCATTGCCGGTGGTGGGGCATTGCACGCGGCCGAGCAGTTGCAGCAACTGAGCACCCGGCTGGCAGCGC CATTGTTCACCAGCGTGGCCGGCAAGGGCCTGCTGCCAGCGGACGCACCACTGAATGCCGGCGCCAGCCTGTGCGTCGAGCCCGGCTGGCAGCTGATCAG CCAGGCCGATGTGGTGCTGGCAGTGGGTACCGAAATGGCCGACACCGACTTCTGGCGCGAGCGCCTGCCGATCAGCGGCGAGCTGCTGCGCGTGGACATC GATCCGCGCAAGTTCAATGACTTCTATCCCTGTGCCATTGCGCTGCACGGCGATGCCCGGCAAACCCTGGCCGGCCTGCTCGAGCACCTGCCAGCGCTGG ACCGTGACCCGGCCCAGGCCAGCGAAGCCGTGGCCAACCTGCGGCTGGCCATCCGCAACGGCCATGCGCCGCTGCAGGCCGTGCACCAGGCGATTCTCGA CCGTATTGCCGCCGTGCTGCCCGATGACGCCTTCATCAGCAGCGACATGACCCAACTGGCCTATACCGGCAACTACGCCTTCGCCAGCCGGGCGCCGCGC AGCTGGCTGCACCCCACAGGCTACGGCACCCTCGGCTACGGGCTGCCGGCCGGCATCGGCGGCATGTTCGCCAGCGACCACCGCCCAGGCCTGGTGCTGG TGGGCGACGGCGGCTTCCTTTACACCGTCCAGGAACTGGCCACGGCAGTCGAGGAGCTGGACCGACCGTTGGTCGTGCTGTTGTGGAACAATGACGCCCT TGGCCAGATCCGTGACGACATGCTTGGCCTGGACATCGAGCCGGTCGGCGTACTGCCGCGCAATCCGGACTTCATCGGCCTGGCCCGTGCCTTTGGTTGC ACGGTGCGCCAGCCGCGTGATCTGGATGCGCTGCAGGCCGATCTGGCCAGCGGTTTCGCCACCCCCGGCGTCACCTTCATCGAGCTCAAACACACCTGCG TCTGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCAGACACCACGAACAACAAGAGAAACCACCATGCCATTTCGCCGTACCCTCCTGGCTGCATCCCTCGCTCTGCTGATCACCGGCCAGGCCCCGCTG TACGCCGCACCACCCCTGTCGATGGACAACGGCACCACGGCCCTGACCGTGCAGAACAGCAACGCCTGGGTCGAAATCAGTGCCGGCGCCCTGCAACACA ACATCCGCACCCTGCAGGCCGAGCTGGGCGGCAAGTCCAAACTGTGCGCCGTGCTCAAGGCCGATGCCTATGGCCATGGCATCGGTCTGGTGATGCCGTC GATCATCGCCCAGGGCGTGCCTTGCGTGGCGGTGGCCAGCAACGAAGAGGCCCGGGTGGTGCGCGCCAGTGGCTTTACCGGGCAACTGGTGCGGGTACGC CTGGCCAGCCTCGGCGAAGTTGAAGATGCCTTGCAGTACGACATGGAAGAACTGGTCGGCAGCGCCGAGTTCGCCCGCCAGCTCGATGCCCTCGCCGAAC
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| Amino Acid Sequence |
>decarboxylase
MNKHTPTAGQALVRLLANYGVETVFGIPGVHTLELYRGLPGSGIRHVLTRHEQGAGFMADGYARVSGKPGVCFVITGPGVTNAATAIGQAYADSIPMLVI SSVNHTASLGKGWGCLHETQDQRAMTAPITAFSAVALRGDDLPELIARAWAVFDSERPRPVHISVPLDVLAAPVSRDWSDEVVRRPGRGQPCRDILDQAA VKLAAARRPMIIAGGGALHAAEQLQQLSTRLAAPLFTSVAGKGLLPADAPLNAGASLCVEPGWQLISQADVVLAVGTEMADTDFWRERLPISGELLRVDI DPRKFNDFYPCAIALHGDARQTLAGLLEHLPALDRDPAQASEAVANLRLAIRNGHAPLQAVHQAILDRIAAVLPDDAFISSDMTQLAYTGNYAFASRAPR SWLHPTGYGTLGYGLPAGIGGMFASDHRPGLVLVGDGGFLYTVQELATAVEELDRPLVVLLWNNDALGQIRDDMLGLDIEPVGVLPRNPDFIGLARAFGC TVRQPRDLDALQADLASGFATPGVTFIELKHTCVC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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