Pseudomonas putida KG-4, V520_RS05085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGCCGATCGCCTGCGCGCGCTGGACTATGAAGTGACCCACACGGTGATCCGCTCGCCGATCGACGGCATGGTCCAGGCCCTGAGCATCGCCACGGTC GGGGGCATCATCCAGCCTGGGGCAAAGATCATGGAGGTGGTGCCGCTCGACCAGCCGTTGCAGGTGGACGCGATGATCCCGGTGCAGGCCATCGACAAGA TGGTGCCGGGCCTGGACGTGGACCTGGCCTTCCCCGCCTTCAACCATGCGCAGACGCCAAACATCCCGGGGCGGGTCAAGACGATCTCAGCCGACCGCCT GATGGACGAAGAAAGCAAGCAGCCGTACTACCTGGCCCAGGTGGAAGTGACGCAGGACGGCATGGGCTTGCTGGGCAGCAACCACATCCGCCCCGGCATG CCGGCCACCGTCACCATCAAGACCGGCGAGCGCAACCTGCTCAGCTACCTGCTCAAGCCGATGCTCGAACGCGTGGACGCCTCGTTCAAGGAGCAATGAC
|
|
| DNA Sequence for Gene |
>V520_RS05085
ATGAATCGCCCGTGCCTGATGTTGTGCCTGTTGGGGTTGTCCGTACAGGCCAGTGCCATGGACCTGAAGCAAGCCTGGGACCTGCTGCAGTACCAAGGCC CGATCTACCGCGCCGCGGTGCACGAGAAAGAAGCCGGCAGCGAGAACCGCGCCATCGGCCAGGCCGGCCTGCTACCGCAGATCAACGCTGCGGGCTACTT CAACAAGGTCAATGGCAGCCAGCGTCAGAATGGCCGGGACAGCGACCTGGACTATGACTCCAAGGGCGCCAACGTGCGTTTGCGCCAACCGCTGTTCAAC AAGCAGAAGATGGCCGAATACCGTCAGGGCCAGCAACGTGCCGACTACAGCGTGGCGGTGTTCGATGCCAAGAGCCAGGACGCTGCGGTGCGTCTGGCAG ACGCCTACTTCGACGTGCTGCTGGCCAGTGAAACCATCACCCTGGCCAAGGCCAAGCTGAATGCCTTCGAAGAGCAGTTGGCGTCGGCCAAGCGGCGCAT GGAGCTGGGTGCCGGCACCATCACCGACATCGACGAGTCGGTAGCCCGTCGCGACCTGGCCGAGGCAGACCTGATCGAGGCCCAGGACAACCTGGTCAAC GCCCGCCGAAAGCTGGAAGAGTACATCGGTGAAACGCCGGAGTCGCTGACCACCTTGCAGCCGGGCTTCAGCACCCCGCCGCTGATGCCGGGCAACCTGC AGGACTGGCTGGTCAAGGCCCAGGCCGACAGCCCGTTGATTCATGCGCGCCGGCACAATTACGAGCTGGCCGAAGAAGAAGTGAAACGCGCCCGCGCCGG GCACTGGCCGACACTGGATTTCGTGGCGGGCTATACCGCCGGCAGCAGCCAGTCGATTTCCGAACTGAACCAGCGCAACCACTACAGCTCGATCGGGCTG GAGCTGAACATTCCGCTGTACAGCGGCGGCAGCACCAGCGCCCTCACCCGCCAGGCCAGCGCCAACAGTTCCAAGGCCCTGGATGAACTGGACGCCACAC GCGAGGAAGTGATCTCTGGCACCACCCGCGAGTACCGCGGCGTGCAGAGTGGCGCCTTGCGCATTCAGGCGCTGGAAAAGGCCGTGGCATCCAACGAACG CTCGCTGCTTTCGGCCCGCAAGGGGTTCAGGGAAGGCGGCACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAATTGCTGTTTGACGCCCGGCATGAC CTGTTCGAGGCGAAGCTGAACTACCTGATGTCGCGGCTGCGCCTGGCATCGTCGGTGGGCAGCCTGGGGGATGACGATATCCAGCAGATCAACGATTACC TCGGCCCGGAACTGGTGGTAAGCAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTACCGGCAGCCCAGCGGCAGCGGGCATGCCCGCTCTGGCAGGGTATGTGGCACCTGCCGCATTTTGTTCCATTTCAGGCTATGATCGGTCACCCTGCCG CGGACGCCCTGCCCCATGCCCGTAGACTTGCAAGCGTTATACCCCAGGCTGATCCACCTGATGCTGGACACGGTGTTCGTGGTCGACAGGGACAACCAGA TCGTTTTCGTCAGCGATGCCTGCGAGGCGCTGCTGGGCTACCGGGCCTGCGAATTGATCGGCACCCCGATCACCGACTACATGCACCCTGACGACCTGGC GATCACCCGTGCATCGATTCTCCGGGTGATGAACGGCCAATCCCATTACGACTTCCGCAACCGCTACATCCGCAAGGATGGCGGTATCGTGCACATCCTG TGGGCAGCCTGCTGGTCCGATGAGGCCGATGCCCGCATCGGTGTGGCGCGGGATGTCACCGCCCAACACCAGGCCGAGGAGGAACTGCGCTTCCTGGCCC
|
|
| Amino Acid Sequence |
>channel protein TolC
MNRPCLMLCLLGLSVQASAMDLKQAWDLLQYQGPIYRAAVHEKEAGSENRAIGQAGLLPQINAAGYFNKVNGSQRQNGRDSDLDYDSKGANVRLRQPLFN KQKMAEYRQGQQRADYSVAVFDAKSQDAAVRLADAYFDVLLASETITLAKAKLNAFEEQLASAKRRMELGAGTITDIDESVARRDLAEADLIEAQDNLVN ARRKLEEYIGETPESLTTLQPGFSTPPLMPGNLQDWLVKAQADSPLIHARRHNYELAEEEVKRARAGHWPTLDFVAGYTAGSSQSISELNQRNHYSSIGL ELNIPLYSGGSTSALTRQASANSSKALDELDATREEVISGTTREYRGVQSGALRIQALEKAVASNERSLLSARKGFREGGTSTNSDVLNAEELLFDARHD LFEAKLNYLMSRLRLASSVGSLGDDDIQQINDYLGPELVVSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|