Pseudomonas putida KG-4, V520_RS00175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KG-4 contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGCTCAGATCGTTGCCGAATACCAGCAAGCCGCCGGCGATACCGGTAGCCCGGAAGTGCAGGTTGCTCTGCTGACCGCCAACATCAACAAGCTGCAAG GCCACTTCAAGGCCAACGACAAAGACCACCACTCCCGTCGTGGTCTGATTCGTATGGTCAACCAGCGTCGTAAGCTGCTGGACTACCTGAAGGGCAAAGA CACCACTCGTTACAGCGCCCTGATCGGTCGCCTGGGTCTGCGTCGCTAATAGCGGCCTGGCCAGTGGTGTGCATGGCGTGTCGCAGGCTTCGGCAGGGCT GTTTTGCAGCGCTGCCGTTGGACACGCCACGCGTATCTCCGAGGTTGGCAGCCTGGCAACGCTGAGCGGATCTTCCGCTTGGCGCCAGGCTCCCAGCCTC GTGTTGTATCTGGACGGTCAATGGGGCCGATTCCCCGTTCTGCCCAAGAATTCGCAAGAAACCAGTTCCCCCCAAGAGCCACTGAAAAAGGTAGGAAACC
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| DNA Sequence for Gene |
>V520_RS00175
GTGAACCCGGTAATCAAGACTTTCCAGTTCGGTCAATCGACCGTTACTCTCGAAACGGGCCGTATTGCCCGTCAGGCAACCGGCGCTGTGCTGGTTACCG TCGACAACGACGTCACCGTGCTGGTGACCGTGGTAGGCGCCAAGCAGGCTGATCCAGGCAAGGGTTTCTTCCCGCTGTCGGTTCACTACCAGGAAAAGAC CTACGCCGCCGGCAAGATCCCGGGTGGCTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAGACCCTGACCTCGCGCCTGATCGACCGTCCGATCCGT CCGCTGTTCCCGGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTGGTTTCCACCAGCAAGAAGACCGACCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATTTCCGGCATTCCGTTCGAAGGCCCGATCGGCGCCGCTCGCGTTGCCTTCCACGAAAGCACCGGCTACCTGCTGAACCCGAC CTACGAGCAACTGGCTGCCTCGAGCCTGGACATGGTCGTTGCCGGTACCGAATCGGCTGTACTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCCGTACTGTTCGCACACGACGAATTCCAGGCCGTGATCCAGGCCGTCAAGGAACTGGCCGCCGAAGCCGGCAAGCCGACCTGGGACT GGCAGCCAGCCCCGGCCAATGTCGAGCTGATGAACCTGGTGCGTGGCGAGTTCGGTGAAGCCGTTTCGCAGGCATACACCATTACCCAGAAGGCTGACCG CTACAACCGCCTGGGCCAGCTGCGCGACGAAGCTGTTGCCCGTCTGAGCAACGAAGAGACCGGCCCGTCCGCCAGCGCCATCAAGGACATCTTCGGCGAA CTGGAATACCGCACCGTCCGTGAGAACATCGTCAACGGCAAACCGCGTATCGACGGCCGTGACACCCGCACCGTGCGCCCGCTGAACATCGAAGTGGGCG TATTGCCGAAGACCCACGGTTCGGCGCTGTTCACCCGTGGTGAAACCCAGGCCCTGGTTGTCGCGACCTTGGGTACCGCACGTGACGCCCAGCTGCTGGA CACCCTGGAAGGCGAGAAGAAAGACCCGTTCATGCTGCACTACAACTTCCCGCCATTCTCGGTGGGTGAGTGCGGCCGCATGGGCGGCGCCGGCCGTCGT GAAATCGGTCACGGTCGCCTGGCCCGTCGTGGCGTGCAGGCCATGCTGCCGAGCGACAGCGACTTCCCGTACACCATCCGTGTGGTTTCGGAAATCACCG AATCCAACGGTTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCCCTGATGGACGCCGGTGTACCGATGAAGGCCCCAGTTGCTGGTATCGCCAT GGGTCTGGTCAAGGAAGGTGACAAGTTCGCTGTCCTGACCGACATCCTGGGTGACGAAGACCACCTGGGCGACATGGACTTCAAGGTAGCCGGTACCGCC AAGGGTGTTACCGCGCTGCAGATGGACATCAAGATCAACGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAGGCCCTGGAAGCGCGCCTGAACA TCCTCGGCCAGATGAACCAGATCATCGCCCAGTCGCGTAGCGAGCTGTCGGCCAACGCTCCGACCATGATCGCGATGAAGATCGACACCGACAAGATCCG TGACGTCATCGGTAAAGGCGGCGCCACCATTCGCGCCATCTGCGAAGAGACCAAGGCTTCGATCGACATCGAAGACGATGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCAGAGGCTGCCAAGCAGCGCATCCTGGGCATCACCGCCGAGGCCGAGATTGGCAAGATCTACGTCGGCAAGGTCGAACGCATCG TCGACTTCGGTGCCTTCGTCAACATCCTGCCTGGCAAGGACGGCCTGGTACACATCTCCATGCTGAGCGATGCTCGCGTCGAGAAAGTTACCGACATCCT GAAAGAAGGCCAAGAAGTCGAAGTACTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCGATCAAGGATGTTGCCGCGGCCAAGGCCTCGGGC GTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGACTGCCACGCTACAGGAAAGGGCCCTTCGGGGCCCTTTTTTCATGGGCGAAAGGGAACCTTTTGCGGACTTGCATCTTGCATGCAGGTTTACGGTGC GGATTGCAAAATGCACGACGACAGGAATACTGATTTTTCGTTAACTTATTGATTTAAAAGGAAACAAGCGAGGCGGAAAAGCTGGCACAGCGCGTGCAAC TACCTTCATATCTGACGCCAGGACATACGGCGCAGACCTTTCGAAAAACAGGAGTGACTCACATGAAGAAGTTCGCCATTGCTGCCGCTACTGCTACCGC CCTGACCCTGACCCTGGCTAACGGCGCATTCGCTGCAGAGCCAACCCAGGCTCCAGTCATGTTGGCCGCCAATACCGTGGACAACGCCAAGCAGGAAGGT TCTGACACCTGGATCACTACCAAAGTGAAAGCGGACCTGCTGACTGAAAAAGGTATTCCAGGCAGCGACATCAAAGTCGAGACCAGCCAAGGTGTCGTCT
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVVAGTESAVLMVESEAKELTED QMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWQPAPANVELMNLVRGEFGEAVSQAYTITQKADRYNRLGQLRDEAVARLSNEETGPSASAIKDIFGE LEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRGVQAMLPSDSDFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQIIAQSRSELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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