Pseudomonas putida PA14H7, AW38_RS22100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCTGATGGCAGCGGTCACCACACTGCTGCTCAGTGGTTGCAGCAAGGATGAAGTCGCAGCACCGCTCCAGCCCGAGGTGGCAGGACCGACCAGCGTCAC CTTGTATTTCAGTGCTGCCGCCGGGCTCAACCCGGGCGCCAACGGCCAGGCTGCGCCGGTACGCGTGCGCATCTACGAGCTGAAAAACAGCGCCAACTTC AATCGTGCCGATTATTTCGCCCTGGCCGACCGGGCCCCGGCGACCCTGGGCGCCGACCTGATCGATCAGGACGAGGTGCTGGTTCAGCCTGGTGAGCAAC TGCGCATCGAGCGTCCACTGAGCCCGACTACCCGCCAGATTGGCCTGGTGGTTGGCTACCGCGAAGTCGATCAGGCGCAGTGGCGCAGCCTGCTGCCGGT GCCACCTCTGGACTACCAGATCAGCCTCGATGTTCGTGCTGTACGCGGCGCTGTCCATACCTCCCCAACCAGTACCGCCCAATAGGCGATCGGAGAAGCC
DNA Sequence for Gene
>AW38_RS22100
ATGTCCTGGAACAATCGTGTGGTCTGGTCGGAAGGCATGTTCCTCGGAACCCAGCACTTTCAACAACATGACCGCTACCTGGAAAACCTCATCGATGCTC GCAGCCGGCCGTTGTCGGCAGGTGCCTGGGGCTTTTCCGAATTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGCCATCGTCTCGGCTCGTGG CCTGCTACCCGATGGCACGCCGTTCAACATCCCCCAGGATGACCTGGCGCCCAGCCCGCTGAATATTGACGATAACCTGCGCGATGGCCTGGTGTACCTG GCCCTGCCGCTCAAGCGCGCCGGTGCCCGCGACACCGTGGACGAGGGCGAAGCACTGGGCGGTGCGCGTTATGTCAGCCGGGTGGCCGAAGTGCGCGACG ACAATGCGCCGTTCGAGAACCGCTCGCCGGTTGCCCTTGGTTCCCGCGCCTTGCGTTTGATCACCGCCGACGAAGGCTTGAGCGACTATGCCGCACTGGG GCTGGTGCGCATCAAGGAAAAGCGTGCCGACCGCGCGTTGGTCCTGGATGACAGCTATATCGCGCCAGTGCTGGATGTCTCGGCGAGCAAAAGCCTGTCG GCGTTTCGCAGCGAACTGCTGGGCTTGCTGCATCAACGCGGCGAGGCACTGGCCGGGCGCGTGGTGGCCTCGGGGGCGGGAGGCGCTTCGGAGATCGCTG ACTTTATGCTGCTGCAGCTGGTCAACCGCGCGCAGCCGCTGGTTGAGCACCTCAGTCAGCTGAGCCCGCTGCACCCGGAGCGGCTGTACAGCGAACTGCT CAGCCTGGCCGGCGAGTTCGCCACCTTCTGTGCCAGCAACCGCCGTCCGGGCGAATTCCCGGTGTACCAGCATGACGACCTGGCGGCGAGCTTCACCCCG GTCATGCAGGCGCTGCGCGAAGCCCTGTCGATGCTGATCGACAGCAAGGCCACGCCGATCCCGATTGTCGAAAAGGCTTATGGCATTCACGTCGCCATGC TCGCCGACCGCAGCCTGCTCGACAACGCCAGCTTCATCCTCGTGGTACGCGCCGATGTGCCGAGCGAAACCCTGCGCGGACGCTTCGCCCAGCAGAGCAA GATCGGTGCGGTCGAGCACATCCGTGACCTGGTCAACCTGCAATTGCCGGGCATCGGCCTGCTGCCGTTGCCAGTGGCGCCACGGCAGATTCCGTTCCAT GCCGGCTCCACCTATTACGAACTTGATCGCGGTAGCGAGCACTGGCAGCAACTGCAGAACGCCGGGGGCTTTGCCTTCTACATTGCCGGCGAATTCCCGG GGCTGAACCTGGCCTTCTGGGCCATCCGAGGATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGCGATGCAGCCTAACGATCCGTCGGCACCACCGGCCAATGACCGCACCCAGTTCATGCCGCGTCCCGGTGGACGCGGCCCGCAGGCGGGTACGCCGG AGCCGGCGGCTGCACCGTCGATGCCGGCACAGCCGCTGCCTGCTGGCCAGGCGCTGGGCCTCAATCCGCTGGAAAGCGCCGCCGGCCCGTTGTTGGCACT GCTGACCCGCTTGCGCAGCACCATCGCTCATCCGGCCCCGGCCAGCCTGCGTGCGCAGTTGCTGGCGTATCTGCGTCAGTTCGAAGAACGCGCCGAAGCG GCCGGTGTGGCCCGCAACGAAGTGCTGCTGGCCCGCTACGCGCTGTGCACCGCACTCGATGAAGCGGTACTCAGCACGCCTTGGGGCAGCAGCAGTGATT GGGGCAAGCAAAGCCTGCTGATCACTGTGCACAACGAAGCCTGGGGCGGCGAGAAGGTCTTCCAGTTGCTTGAACACTGCCTGCAGAGCCCACGCGAACG
Amino Acid Sequence
>type VI secretion protein
MSWNNRVVWSEGMFLGTQHFQQHDRYLENLIDARSRPLSAGAWGFSELLIDQGLLAQGKLAIVSARGLLPDGTPFNIPQDDLAPSPLNIDDNLRDGLVYL ALPLKRAGARDTVDEGEALGGARYVSRVAEVRDDNAPFENRSPVALGSRALRLITADEGLSDYAALGLVRIKEKRADRALVLDDSYIAPVLDVSASKSLS AFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLVEHLSQLSPLHPERLYSELLSLAGEFATFCASNRRPGEFPVYQHDDLAASFTP VMQALREALSMLIDSKATPIPIVEKAYGIHVAMLADRSLLDNASFILVVRADVPSETLRGRFAQQSKIGAVEHIRDLVNLQLPGIGLLPLPVAPRQIPFH AGSTYYELDRGSEHWQQLQNAGGFAFYIAGEFPGLNLAFWAIRG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site