Pseudomonas putida PA14H7, AW38_RS20880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAACATGGTCCGCGATGCGCTGGATGCCTTTGCCCGTTTCGACGCCGACCTGGCGCTGTCGGTTGCCCAGTACGACAAGACCATCGACCGCGAGTACAA GACCGCCCTGCGTGAGCTGGTCACCTACATGATGGAAGATCCACGCTCGATCTCGCGCGTTCTCAGCGTGATCTGGGCTTTGCGTTCGCTGGAGCGTATC GGCGACCACGCACGCAACATCTCCGAGCTGGTGATCTATCTGGTGCGCGGCACCGACGTGCGTCACCTGGGCCTCAAGCGCATGCAGGAAGAGGTTCAGC GCAGTGGCGAAAAGGCTAATGTTCCGGGCAAATCTGACGATAACTAAGACTGCCCCGAGAATGAACGCCCGGCCCTGGCCGGGCGTTTTCGTTTGCGGGT GAGGCAGCCGCGAACGAAACAACGAGTCCCGGCGTGACCCAATGTTTGGCAAATGGCCATCAGTCAGCGTTATGCTAGTCGGGATTCAATAGGAGTGGCG
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| DNA Sequence for Gene |
>AW38_RS20880
ATGAGTAAAGTCAGTGTGTTGGTTGTGGATGATGCGCCGTTCATTCGCGACCTGGTCAAGAAATGCCTGCGTAACTACTTCCCCGGTATCGTCATCGAAG ATGCGGTCAATGGCCGCAAGGCCCAGACCATGTTGAGCCGCGAGACTTTCGATCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCCGGCCTTGAGCT GCTGACCTGGTGCCGTCAGCAAGAGTCGATGAAGACCCTGCCGTTCATCATGGTGACCAGCCGTGGCGACAAGGAAAACGTGGTCCAGGCGATTCAGGCC GGGGTTTCGGATTTTGTCGGCAAGCCGTTCACCAACGAGCAACTGCTGACCAAGGTGAAGAAGGCCCTGACCAAGGTCGGCAAGCTCGATACCTTGCTGG CCAGCGCCCCAACCCGCGCTACGTCGGCGTTTGCCAACGATTCGCTGAGTGCCCTGACCGGCGGCCGTGCCGAAACGGTCAAGCCGTCAGCGCCAGCGGC CCCGGCGGCGGCCAAACCACTGGTGAGCGCTCCCAAGCCTGCAGCAGCGGCGCCGGCAGGGCGTGGCCAGGGCCAACTGCGCCTGCCCAGCGGCGTTCAG CCATGCGTGATCAAGGCGTTGAGCCTCAAGGAAGCGCTGCTGGTGGTGCGCCGTGGCGAAACCCTGCCGCAGGTACTGGAAGGCGCGGTGCTCGACCTGG AGCAGGGCGAGAACGCCGAGATCGCCCGTCTCAATGGCTACCTGCATGCGATTGCTGCACTGGAGCCCAAGCCGGATAGCGACTGGTTGCAACTGACCTT CAAGTTCGTTGATCAGGATGCCCAGAAGCTCGACTACCTGTCGCGCTTGATCGCTCGCGGCTCGGCGCAGAAGCACTTCGTGCCGGGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAGCCCATCGCGGGGCAAGTCGGATCGCCGCACCGCCGCTCCGACTTGCCCCGCGATGAATGCACCGTTCGTCTCCTGGCACATCCCGCAAACACTCTC GCCATACCCCCGCCAAAATCCGCTGCTAGGCTTCGACAGACCACTAACTGTCAAAAAGCCACTACTCATGCCCGCACGCACGCTGCTGTTCTGCGCCTTG CTCATGGCTTGCGGCCCTGTGCTGGCCATGACCCTCTACAAAAGTACCGACGCCAATGGCGTGGTGTCCTATTCCGATCGGCCGATCCCCGGCAGCCGGG CGTTTGTCTTTGGCGACAGGATGGTTGAACAGCTGGAAACCCAGGTGCAGTTGCAGGTCAACAGGTTTGCCGGTGGCGTGCGTTTCAGCGCACGCAACGA CACCTATGCGCCGGTCGAGGTGGAGCTGCGCCTGGAGCGCATGGGCAATGTGCAGGGTGGGGCATCACGGCTGGTACGGGGGGTAATACCGGCGCGTACG
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| Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDAPFIRDLVKKCLRNYFPGIVIEDAVNGRKAQTMLSRETFDLVLCDWEMPEMSGLELLTWCRQQESMKTLPFIMVTSRGDKENVVQAIQA GVSDFVGKPFTNEQLLTKVKKALTKVGKLDTLLASAPTRATSAFANDSLSALTGGRAETVKPSAPAAPAAAKPLVSAPKPAAAAPAGRGQGQLRLPSGVQ PCVIKALSLKEALLVVRRGETLPQVLEGAVLDLEQGENAEIARLNGYLHAIAALEPKPDSDWLQLTFKFVDQDAQKLDYLSRLIARGSAQKHFVPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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