Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCAACCAGCTTTTCCTTATGGACGGAAAATCGGCTCCGTTTGGGGGATCACCCGGGGCGAGCTGACAGGTCGCGAGTAACGGATCACTTAAACATAGAAA AAAAGAGAGGACTTATTTAAAGCTTTTTAGTGAATCTTATAAAGCTTATGTGGAGGATTTCTGTGGATAACAAGCTACAGCCCTTTAAATACCTTATGTA CAGAGGAAAGAAACCTTGTCGAGAAGAGGTGCTCTTGCTGTGCTGTAGCTTCGGAAAAGCTGTGGATCAAATGGCATGTTATCCACAGGCGGGTTATCAA CAGATTTCGACCCCCAGTTGTGCAAAGACCTCAGGTGCGGTTATCCACAGGGCTTATTCACATGCCCAGAACGACATTTTGGTCAGTAAACTGCTGATTT ATCGCCATCCTTGACGCACCTGCATGTGGATAACTGCGCTGGCGCTGGGTACAATGGGCGCTTGTTTTTGCCTCACCGGCTTTCAACTCAGGGGATATCC
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DNA Sequence for Gene |
>AW38_RS20410
GTGTCAGTGGAACTTTGGCAGCAGTGCGTGGAGCTTCTGCGCGATGAACTGCCTGCCCAGCAATTCAACACCTGGATCCGTCCGCTACAGGTCGAAGCCG AAGGCGACGAGTTGCGCGTCTATGCGCCCAACCGTTTCGTTCTCGACTGGGTCAATGAAAAGTACCTGAGCCGTCTGCTCGAGCTGCTGGGTGAACACGG CAACGGTATTGCGCCTGCCCTTTCCTTATTAATAGGCAGCAGACGCAGTTCGGCACCGCGTGCCGCACCCAATGCACCGCTCGCTGCGGCCGTTGCCGCA TCCCAGGCCCAGGCTGCACAAACTGCGGTGGTCAGCGAACCTGTAGCCGCACCTGTCGCAGCCCAGGTACCGGTGGCCGAAGTCGAGGAAGCGCCTTCGC GTGACAGCTTCGATTCCATGGGCGAGGCCAATGCCGCCCCGGCGCCGAGCGGTCGCACCGAACAACGCACGGTGCAGGTCGAGGGTGCGCTCAAGCACAC CAGCTACCTGAACCGCACCTTTACCTTCGAAAACTTCGTCGAAGGTAAGTCCAACCAGCTGGCCCGCGCTGCGGCCTGGCAGGTTGCCGACAACCCCAAG CATGGCTACAACCCGCTGTTCCTGTACGGCGGTGTGGGCCTGGGTAAAACTCACCTAATGCACGCTGTGGGTAACCACCTGCTCAAGAAGAACCCGAATG CCAAGGTGGTGTACCTGCACTCCGAGCGCTTCGTCGCCGACATGGTCAAGGCGCTGCAACTCAATGCCATCAACGAGTTCAAGCGCTTCTACCGTTCGGT CGACGCGTTGCTGATCGATGACATTCAGTTCTTTGCCCGCAAAGAGCGTTCCCAGGAAGAGTTTTTCCACACCTTCAACGCCCTGCTCGAAGGCGGCCAG CAGGTCATTCTGACCAGCGACCGTTATCCGAAGGAAATCGAAGGCCTGGAAGAGCGCCTGAAGTCGCGTTTCGGCTGGGGCCTGACCGTTGCGGTAGAGC CGCCGGAGCTCGAGACCCGGGTAGCGATCCTGATGAAGAAGGCCGATCAGGCCAAGGTCGACCTGCCGCACGATGCTGCTTTCTTTATCGCCCAGCGTAT TCGCTCGAACGTGCGTGAACTCGAAGGCGCCCTGAAGCGGGTCATTGCTCACTCGCACTTCATGGGCCGTGACATCACCATCGAGCTGATTCGCGAATCG CTCAAGGATCTTCTGGCACTGCAGGACAAACTGGTGAGTGTGGATAACATCCAGCGCACCGTTGCCGAGTACTACAAGATCAAGATCTCCGATCTGTTGT CCAAACGTCGTTCGCGTTCGGTAGCCCGTCCGCGGCAGGTCGCCATGGCCTTGTCCAAAGAGCTGACCAACCACAGCCTGCCGGAGATCGGCGACGTTTT CGGCGGCCGCGATCACACCACCGTGTTGCATGCGTGCCGCAAGATCAACGAACTCAAGGAATCCGACGCGGATATCCGCGAGGACTACAAGAACCTGCTG CGGACTCTGACGACTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGAACGTCAGCGCAGCTTATTAAAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCAGGCGTC GTCGAGCGCCGCCAGACCTTGCCGGTACTGTCCAACGTCCTGCTGGTGGTACAGGGTCAGCAATTGTCGCTGACCGGTACTGACCTGGAAGTAGAGCTGG TTGGCCGTGTGCAATTGGAAGAGCCGGCCGAGCCTGGCGAAATCACCGTGCCTGCGCGCAAGCTGATGGACATCTGTAAAAGCCTGCCCAACGACGTGCT GATCGACATCAAACTCGATGAGCAGAAGCTCGTGGTCAAGGCCGGGCGTAGCCGCTTCACCCTGTCGACCCTGCCAGCCAATGACTTCCCGACTGTGGAA GAAGGCCCAGGCTCGCTGACCTGCAACCTTGAGCAAAGCCGCCTGCGTCGCCTGATCGAACGCACTAGCTTCGCTATGGCCCAGCAGGATGTGCGCTACT
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Amino Acid Sequence |
>chromosomal replication initiator protein DnaA
MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLSRLLELLGEHGNGIAPALSLLIGSRRSSAPRAAPNAPLAAAVAA SQAQAAQTAVVSEPVAAPVAAQVPVAEVEEAPSRDSFDSMGEANAAPAPSGRTEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNPK HGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQ QVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRES LKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKNLL RTLTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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