Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGTTCGAGATGCTGTTGCTCGAAGGCTTCCAGGCGGGGCTGTCGTGGATCACCGTGCTGAAAAAGCGCGAACGCTACCGCCAGGTAATGTTCGGCTTCGA TCCGCAGCGCCTGTCACTGATGAGCGATGAAGAAATCGAAGAGCGCATGCTCGACCCGGGCATCATCCGCAACCGCCTCAAGCTCAATGCCGCACGGCGC AATGCCCGGGCCTGGCTGGCGCTGGAACACCCTGTCGAATGGCTCTGGTCGTTCGTCGGCGGCGCACCGAAAATCAATCATTTCGTCCAGCGTAGCGAGG TGCCGGCAGTCACCGACGAGGCCAAGGCAATGAGCAAGGCACTGCAGAAAGCCGGCTTCACCTTTGTCGGTCCGACCATCTGTTACGCCTTCATGCAGGC CACCGGCATGGTCATGGACCACACCACCGATTGTGATCGCTACGCCGCTCTGCTGCGCTGAGGGTTACAATGGCCGGCTTGCAAAAAGAGGAACCAGCCT
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DNA Sequence for Gene |
>AW38_RS20330
GTGGATAAATTCAAGGGCGCCTTGATGGTCGGGGCGTTGCGGTTGTTTGCCAAGCTCCCCTGGGGCGCGGTACAGCGGGTCGGCGCGGCCATCGGCTGGA TCATGTGGAAGGTGCCGAACAGTTCGCGCAACGTGGTGCGTATCAATCTGGCCAAATGCTTCCCGGAAATGGACCCGGTTGCCCGTGAGCAACTGGTGGG CCGGACCCTGATGGATATCGGCAAATCCTTTACCGAAAGCGCCTGTGCCTGGATCTGGCCGGCCCAGCGCTCGCTCGACCTGGTGCGCGAGGTCGAAGGC CTGGAAGTGCTTGAGGCGGCCCTCGCGTCGGGCAAGGGCGTGGTCGGCATCACCAGCCACCTGGGCAACTGGGAAGTGCTCAACCACTTCTACTGCAGCC AGTGCAAACCGATCATTTTCTACCGTCCGCCCAAGCTCAAGGCGGTCGATGACCTGCTGCGCGAACAGCGCGTGCAACTGGGCAACCGCGTCGCGGCGTC GACCAAGGAAGGCATCCTGAGCATCATCAAGGAAGTGCGCAAGGGCGGTCAGGTGGGGATTCCGGCCGACCCGGAGCCGGCCGAATCGGCGGGGATCTTC GTGCCGTTCTTTGCCACCAAGGCGCTGACCAGCAAGTTCGTGCCGAACATGCTCGCCGGCGGCAAGGCGGTCGGGGTGTTCCTGCATGCCCTGCGCCTGC CGGACGGTTCGGGCTTCAAGGTGATCCTGGAAGCGGCGCCCGAGGCGATGTACAGCGAAGACACCGAAACTTCGGCTGCGGCCATGAGCCAGGTGGTCGA GCGTTATGTGCGGGCGTATCCGAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAGCGCCCGACGGGCGAGCCGCGCTGGTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGGCCTCATCGCGGGGCAAGCCCGCTCCTACACAATTATCCACAATCCCTGTAGGAGCGGGCTTGCCCCGCGATGGCTTAGCCAGCCTTATCGAGCTTCT TGAGAAACACCGTCATCTCTTTCTCGGCCTGCTTGTCGCCATGTGCGCGAGCCGCTTCCAGCCCCTGCTCCCAGGCCTTGCGCGCACCTGCCAGGTCACC CTCAAGCTGATGCGCCTTGCCCAGCAGCTTCCACGCCGCCGAGTACTTCGGGTCGTGCTCGACGCAGCGCTGCAAGTGCACGGCCGCCTCGGCGCCATTG CCCTCATCGAGCCAGGCCTTGCCCAGGCCAAAGCGCAACAGGGCGTTATCCACACCCTTGGCCAGCATCTTTTCCAGTGATTCGCGCATTCCAGGTCCCT CTTAGAAGAAGCTCAACCCTACATGGAACAGCTTCTCGACGTCACGGATGTACTTTTTATCCACAACGAAGAGGATCACGTGGTCGCCCGCTTCAATCAC
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Amino Acid Sequence |
>lipid A biosynthesis lauroyl acyltransferase
MDKFKGALMVGALRLFAKLPWGAVQRVGAAIGWIMWKVPNSSRNVVRINLAKCFPEMDPVAREQLVGRTLMDIGKSFTESACAWIWPAQRSLDLVREVEG LEVLEAALASGKGVVGITSHLGNWEVLNHFYCSQCKPIIFYRPPKLKAVDDLLREQRVQLGNRVAASTKEGILSIIKEVRKGGQVGIPADPEPAESAGIF VPFFATKALTSKFVPNMLAGGKAVGVFLHALRLPDGSGFKVILEAAPEAMYSEDTETSAAAMSQVVERYVRAYPSQYMWSMKRFKKRPTGEPRWY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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