Pseudomonas putida PA14H7, AW38_RS17485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGCAACCGTCAAATGCTGCGCGCACGGTAGTGCTTGCCGTTCCCGAGGCACTGGCCAGCCGCTTGCTGCTTGCCGCCCAGGCCGGCAGTTTGCGCCT GGCCGTGCGCAGCGCCGAAGAGAAGCGCCTGGCCCGCTACTGGGCGGACCCCAAAGCCAGTGCTAAGGAAGTCGATAGCGCCAATCGCAAACTCTATCGC TTCAGTCAGCTTGCCCAGCTACCCGCCGCCCAGCCGGTGGCCAGCGTCGCGCCGTCGCGCGGCATAGAAATCATCCGCGGAAATCAAGCCAGACAGCCAA CTCCCTGACCAAGCAAGGATGCCCTTCAATGAGCAGTCGTTCCGAGCGGGTAATCAAGCAGATGCTCTGTGCCTTGCCGTGCACTGCGCCGCAGTTGCCA ACGGCGCTGGCAGCACCCAAGGGTTGCGCCATGACGTCCCGAACCGGGGCTGGTTGTTCCTCGAAAACGGCGACTTCGAACGTCGCAGCGGGTTATCCCA
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| DNA Sequence for Gene |
>AW38_RS17485
ATGAGTGAAAGCCTGAGCCAGACCTTCCTTGCCATCACCCGTAACGATGGCGACTTGCAGTGGTTGCAAGGTGCGCTGGCGCCAATGGGGCAGGTGGTGG GCGCCGGCAGCGGCAGCCTTGACGAGTTGCTGGCGCTGGTCGATGTCACCTTTGCCAGTTTGGTGTTCGTGGGGCTGGATCGTGAGCAGGTGGTCAATCA GTGCGCATTGATCGAGGGGGTGCTGGAAGCCAAGCCGATGCTGGCAATCGTTGCCCTGGGCGATGGCATGGACAACCAGTTGGTGCTCAATGCCATGCGT GCCGGGGCGCGGGACTTCGTCGCCTATGGCTCACGCTCCAGTGAAGTCGCAGGGTTGGTGCGGCGCTTGAGCAAACGCCTGCCGCCAGTAACCAGCAACC CCAGCCTTGGGGGGCTGACGGTACTCTATGGCGCCCAGTGCACCGCTGATGGCGCCTTGCTGACCACCCATATGGCGCGAGTGGTGCAAACCAGCGGCCA GCAAACGTTGCTGCTGGACCTTGGCGTGCCTCGTGGCGACAGCCTGGCGTTGCTCGGCCTGGAAGCCTCGTTTCATTTCGGCGATGCCCTGCGTCACTTG CGCCGGCTCGACAATACCCTGATCGACAGCGCCTTCACGCGTGAAAGCTCGGGCCTGCGCCTGCTGGCCTACGCCGAGACTGACGAGCCGCTGGAGCGCA CCAGCGCGGCGGAGCTGTACATGCTGCTCAGCGCCTTGCGCCAGCATTTCCAGCACATCGTCGTGAACCTGGCCGGGCAGGCTGACAGCGAAGCCTTGCG CACCTTCGTCAGCCATTGCGACAAGCTGATCTGGTACACCGACCAGAACGTCCTCGATTGCCGGCGCAACCTGGAGGTACTGACTCAATGGCGCGAGAAG GGCATGAAACTCGAACACGCCAGCCTGCTGGTCGACCGCTACCTGCGCGGCGTCGCACCGGACTCCGAAGCCCTGGGAAAGCGCTATGGCTTGCCGGTTC TACGGGTTTTACCCTACAGCCCAGAGGTGCGCCTGAATGCCAAGAACCAGGGCCTGACCTTGTTCGAACTGGCGCCGCGCGAGCAGCTCACCCAACATTT GAAAGCGCTCGGTGAACGGCTGGCGCGCCGCTCCGAGAGCAACCCTGCGGTCAGCGCCAACTGGCTCAATCGGTTATGGGGGCATAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGTGACGAACTGTTCGGCGGCCCGCGGCACAACCTGGGGGCCGACCCGCAAGGGCTCAAGCGTGCCTTGCATCGTTACATCATCGACGCCATCGAGGA TAGCGGGCGCAACCTGCTCGAAGGCTCGCGCCCGGCCTTGGCGCAATTTGTGGTGGAGCAGGTCGGCGACTATATCGCCCGATTGCACCTGGCCCTGTCG CGCTACGAGATGGAACGCCTGGCCGAGGAAATCGTCGACGAACTGACCGGCTTCGGTCCGCTTGAAGTGCTGTTGCGCGATACCAGCGTCACCGAAATCC TGGTCAACGGTCCGCACCGGGTGTTCATCGAACGAGCCGGCGTGCTGCAGCGCACGGATCTGCGCTTTATCGATGCGCACCATGTCGAGCGGGTCATGCA ACGGATTCTCGCGCCCTTGGGCAGGCGCCTGGATGAATCGTCACCCATGGTCGATGCGCGTATGCCTGACGGCAGCCGGGTCAACGCGATCATTCCGCCG
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| Amino Acid Sequence |
>pilus assembly protein
MSESLSQTFLAITRNDGDLQWLQGALAPMGQVVGAGSGSLDELLALVDVTFASLVFVGLDREQVVNQCALIEGVLEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPPVTSNPSLGGLTVLYGAQCTADGALLTTHMARVVQTSGQQTLLLDLGVPRGDSLALLGLEASFHFGDALRHL RRLDNTLIDSAFTRESSGLRLLAYAETDEPLERTSAAELYMLLSALRQHFQHIVVNLAGQADSEALRTFVSHCDKLIWYTDQNVLDCRRNLEVLTQWREK GMKLEHASLLVDRYLRGVAPDSEALGKRYGLPVLRVLPYSPEVRLNAKNQGLTLFELAPREQLTQHLKALGERLARRSESNPAVSANWLNRLWGHK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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