Pseudomonas putida PA14H7, AW38_RS12635 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATCGGCGACAACCTCGACGTGCTGGTGATCGATACCGCTGCGGGTATCGGTGACTCGGTAGTCAGTTTTGTCCGCGCCGCCCAGGAAGTGC TGCTGGTGGTATGCGACGAGCCCACCTCGATCACCGACGCCTACGCCCTGATCAAGCTGCTCAACCGCGATTACGGCATGAACCGCTTCCGCGTCCTGGC CAACATGGCCCAGAGCCCTCAGGAAGGGCGCAACCTGTTCGCCAAGTTGACCAAGGTCACTGATCGCTTCCTCGATGTCGCCTTACAATACGTCGGTGCG GTGCCTTACGACGAATGCGTGCGCAAGGCGGTGCAGAAGCAGCGAGCGGTCTATGAAGCCTTCCCGCGTTCCAAGTGCGCGCTGGCATTCAAGGCCATTG CCCAGAAGGTCGATAGCTGGCCGCTGCCTGCCAACCCACGGGGGCACCTGGAGTTCTTCGTCGAGCGTCTGGTGCAACCGACGAGTGCGGGTCCGGTGCT
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| DNA Sequence for Gene |
>AW38_RS12635
|fliA
ATGAACGCCAGCGGTTATCGGATGTACAGCAAGGCTTCGCGTGACGCCCAGTACGAGCTGATCGAGCGTTACGCGCCGTTGGTCAAGCGCATCGCCTACC ACCTGCTGGCACGTCTGCCGGCCAGTGTGCAGGTCGAGGACCTGATCCAGGCCGGAATGATCGGCCTGCTCGAAGTTGCCAACAAGTATGACGCGAGCAA GGGGGCCAGTTTCGAGACCTACGCCGGCATCCGCATCCGCGGCGCCATGCTCGATGAAGTGCGCAAGGGCGACTGGGCACCGCGTTCGGTACACCGCAAT ACCCGCATGGTCAGTGACGCGATTCGTGCAATTGAAGCAAAAACCGGCCGCGACGCTAAAGATCACGAGGTTGCTGCCGAACTTCAATTGAGTCTCGATG ATTATTACGGGATTTTGAATGACACCCTGGGCAGCCGCCTGTTCAGTTTCGACGACCTGTTGCAGGACGGCGAACATGAAGGCCTGCACGAGGACGGTGC CAGTGCCCAGCTCGAGCCTTCGCGCGATCTGGAAGACGAGCGTTTTCAGGCAGCCTTGGCCGATGCCATCGCCAACCTGCCGGAACGCGAACGTCTGGTC CTGGCGCTGTACTACGACGAAGAACTCAACCTCAAGGAGATCGGTGAGGTCCTGGGGGTGAGTGAGTCGCGCGTCAGCCAGTTGCACAGCCAGTGCGCGG CACGTTTGCGTGGTCGCCTGGGGGAATGGCGGGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAAAGGTTCGATGCAGTCGTGAAATGTAGTGCCGAATTGATTGAATGCGCGTTCCGCGCTGAACGCGTTAAAGACTGCTTGGAGGTCTAATTGAACAAA GACATGAAAATCCTCATCGTGGACGACTTCTCGACGATGCGGCGGATCATCAAGAACCTGTTGCGTGATCTGGGCTTTACCAACACCCAGGAAGCCGATG ACGGCACCACTGCGCTGCCGATGCTGGAAAGCGGCCATTTCGACTTTCTGGTCACCGACTGGAACATGCCTGGCATGTCCGGTATCGACCTGCTGCGCAA GGTGCGTGCCGACGAGCGTCTGAAACACCTGCCGGTGCTGATGGTGACTGCCGAAGCCAAGCGCGAGCAGATCATCGAAGCCGCCCAGGCCGGGGTCAAC GGCTACGTGGTCAAGCCGTTCACCGCCCAGGTGCTGAAAGAAAAGATCGAAAAGATCTTCGAGCGCGTCAATAGCTGAGGTACGCCACGGGGGCGCTATG
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| Amino Acid Sequence |
>DNA-directed RNA polymerase sigma-70 factor
MNASGYRMYSKASRDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAQLEPSRDLEDERFQAALADAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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