Pseudomonas putida PA14H7, AW38_RS06685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGGCGATCAACCAGCTCAGCCATCTGGCCGATGTGCTGTACACCGATGGCGGCATGGGCTTGAGCTTTGAACTGCAGGGCAAACCGGTACGCGATGTGG TGCAAACCACCTTCATCCTCAATGGCGAACGGCATCAGTACTTCAACCAGCGGGAAAGCTGGCAACGCTTTCGCTGGCCGGGGCACAGCGACTACCCAGG CACCCGCCTGAGCTGGACCAGCGTCCATACCGGCGAGCGACTGTTGGGTGACTATCAGGGCACGTGGGGCTTGATCCGTTTGCTCGAAGAAGCCCAGGTA ACGCCATTGGACGATGGTGACAGCCGTTTTCGCCTGGTGCTTGAAGCGCCCGATGGCTTGGGGTTGACCTGGAACCTGCGCACTGAACTGGGGGCAGGGC CGTTGGCTATGCTCACGTTGCGTGACTTCACCTTGCCCAAGCAAATCTTTCTCGCCGAGGGTGATAGCCAGCCGAGCTATGCACAGGCCGGGAGCGCCGA
DNA Sequence for Gene
>AW38_RS06685
ATGAGCCTGCAGAACTTGATCGACAGTTGCTTGGCCGAGCATGAGCCCTTGACCCTGGCGCGCGAACACGGGCTGCTTTGGGAGACCTGGATACAACCCA TCGATGCCGTTTCTCCGGTGGGCGTGGATCCAGTCTATGACGATGACTTCCAGCGCATGCGTGAAGAGGTCAATAAACTTTCCGGCGCCGACGTGGACCG TGTGGTGCAACTGGCGCACAAGCTGCTGACCCAAACGTGCAAGGACCTGCGTGTAGCCACGTATTACCTGTGGGCGCGCTTGCACAAGGAGGGAGAGGCT GGGTTGGCTGACGGTCTGAGTTTGCTGGCGGCCTTGGTGCAGCGTTACGCCGCCGAAGTCCTGCCCGTGCGACCCAACAGCCGCAAGATGGCTTTGGAGT GGCTGGCCAGCAGCAAGGTGCTGGACAGCCTCTCCCTGTACCCACAGGTGGTGAAAGCGGAGGCTCAGCGGACGGTCGCCGCCCTTGCCTGGTTGGAAGA CGGGCTCAGCGCCTGGCCGCAAGACCTGCGTCCAAACCTTGGGGCATTGCATAGCGCTTTGTCCGCGCGCTTGACCCAGTCCGGTGGCGTAGATGCACTG GTGCCGCAGAACAGCGCAATTCACGCAGCGACCACGCACAGCGCTGGGGCGAACCTCACGTCGATCAAATCGGGGCGCGACCTGTTGGAAAACGGCCGCG GGCTGGCGGGTTATCTGCGCGAGCAGCCCAAGGGCTGGCTGGCAGCCCACCGCTTAATGAAGAGCTTGCGCTGGGACACGGTGCATCAAGTACCCCCGCA AGATGTCGGCGGCATTACCCGTCTCGCGCCGCCTCGTGGTGAATACCGGGCACAGCTCAAGCGCTTGTATCTGCAACAGAGCTGGCATGAATTGCTTGAC CAGGTCGAACGGGTGTACGCCGAAGGTGTGAACCATTTCTGGTTGGACCTGCAATGGTACCTGTACCAGGCACTGAGCAAGCTTTCGACTCCGCACAGTG GCTGGGTAGGCATCGTCAAACGCGACCTGGGCATGTTCCTCGAACGATTGCCAGGGCTTGAGACGCTGCGCTGGAGCGATGGTTCAGCCTTCGCTGATGA GACCACCTGCGAGTGGATCAGTCAGCAGGTCAGTGGCACCCGCTCCCAGCAGTGGTTGCCTGCTCCCGTAGGCGTATCCGGTAGTGCAGACACCCAGATT CTTTCTCTGGAGAGCGAGGCGCTGGCACAGGCCGACAGCGACGGGGTAGAGCAGGCACTGGCATGGCTGGCGGCCCGCCCCGACGTGGCGACCGGGCGGC AACGCTGGCTACTGCGGCTGCTGATGGCGCGAGTGGCCGAGCAGTACAGCAAGAGTGAGCTGGCTATTCATCTGTTAGGCGAACTAGATGCCCGCGCCCA GCGCCAGGCGTTGACCGAGTGGGAGCCTGAGCTGAGCTTCGAGGTCAAGGCGCGCCTGCTTAAGCTGCTGCGCTCGAAAGCACAGCGCAATGATGCCGAC AAGCCGGCCCTGGCCGAGCGAATGGAGACGCTGCTGGCGGCGCTGGTGGCCATGGATCCGGTACGCGCCGCAGTACTTTGCGGCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATTTTATTGAGCGGGATTCTTTTTTGAGCACGGACAATCTGACGCTACGTTACTTCGACGCCGAGATGCGCTACCTGCGTGAGGCCGGCAAGGAGTTCGC CGACGCCTTTCCGGACCGGGCGGCGCAGTTGAACCTGGACAAGCCTGGGGCGGACGACCCTTATGTGGAGCGCTTGTTCGAAGGGTTTGCCTTTCTCATG GGGCGGCTGCGCGAAAAGCTCGACGATGACTTGCCGGAGCTGACCGAAGGGCTGGTCAGCCTGCTGTGGCCACACTACCTGCGCACCATTCCCTCGCTGT CGGTGATCGAACTGGTGCCCGAATTGGAGCAAATGAAGCGCAGCGAGGTGATCGCCAAGGGGTTTGAGGTGTTGTCGCAGCCCATCGGCCCGCAGCGCAC CCGTTGTCGCTACACCACCACTCAGGCGTTGACACTCCATCCACTCGTGCTGGAGTCCCTGCGCCTGGGGCACGAGCCGGACGGACGCTCGCTGTTGCGA
Amino Acid Sequence
>type VI secretion protein
MSLQNLIDSCLAEHEPLTLAREHGLLWETWIQPIDAVSPVGVDPVYDDDFQRMREEVNKLSGADVDRVVQLAHKLLTQTCKDLRVATYYLWARLHKEGEA GLADGLSLLAALVQRYAAEVLPVRPNSRKMALEWLASSKVLDSLSLYPQVVKAEAQRTVAALAWLEDGLSAWPQDLRPNLGALHSALSARLTQSGGVDAL VPQNSAIHAATTHSAGANLTSIKSGRDLLENGRGLAGYLREQPKGWLAAHRLMKSLRWDTVHQVPPQDVGGITRLAPPRGEYRAQLKRLYLQQSWHELLD QVERVYAEGVNHFWLDLQWYLYQALSKLSTPHSGWVGIVKRDLGMFLERLPGLETLRWSDGSAFADETTCEWISQQVSGTRSQQWLPAPVGVSGSADTQI LSLESEALAQADSDGVEQALAWLAARPDVATGRQRWLLRLLMARVAEQYSKSELAIHLLGELDARAQRQALTEWEPELSFEVKARLLKLLRSKAQRNDAD KPALAERMETLLAALVAMDPVRAAVLCG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site