Pseudomonas putida PA14H7, AW38_RS04070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015343 siderophore transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01347 ligand_gated_channel - - 167 805 4.18423E-89
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 162 253 1.2E-14
Gene3D G3DSA:3.55.50.30 - - - 35 133 5.5E-24
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 63 114 8.5E-15
SUPERFAMILY SSF56935 Porins - - 155 805 1.93E-108
NCBIfam TIGR01783 JCVI: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 163 805 2.0E-103
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 63 113 1.5E-10
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 360 802 5.9E-38
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 154 272 3.2E-19
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039426 TonB-dependent receptor-like 131 803 4.0E-104
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 273 805 7.2E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.