Pseudomonas putida PA14H7, AW38_RS01805

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGTTGATCAGGCCCTGGGCGCGGGCATGTTCAAGGTAGGCGGCCAGCTTGCGATGCAGGCGCTGCAGGCTCTGGTAGTCACCGGGGAACAGTTGCGGCTC GACGCCCAGCAGGTTGCCGTGATCGGCCGGCACGCCTTCGCTCAGGGCCAGCTCGATGCGCAGGTCCGACAGGTAGTGCCCGGCCGGGCGCTGTTCGGTC CAGAACCCGTAGCCACTCAGGGCGGCAATGACAACCAGCGCCAGGGCGCTCAACAGAAGTTTTCGCATGGCTGGGAATTTTACTGAGATTTGCCATAGCA ATACAGCAAATCAACGGTTTAGTGCAGCTTTTCTCCCTTGTCGTTGGCTCGCCGCCCTTGGGTTTATGGAAAGGGGCTTAATAGCGATTGAGTCGCAAAC AGCGGTTTTTACTACCGTCTGGACAGGCTGAGTGCCTCGAATTCTTGTCTGAACAGATGGGTGATGTTAATTTGCCACTAATTTTTTCGATGGATCGAAC
DNA Sequence for Gene
>AW38_RS01805
ATGCACCCCGTATTTCCAGGGACGCGGTTTTTGCCTGGCCTATTGGTTTTCAGCGCACTTCTTACGAGCACCGTCCACGCCGCTACATTGACTTCCCCGG GTGACCAGGACCTGATCCGTGACCGTCAGGACCGCCTGCTCGAAGAGCAGCGCCGACGCCTTGAGGAACTCAAGGATCTACCCGGCAAGCCTGCCACCCC TGCAGCGCCCGCGGCCCCTGCCGACAGCCGTTGCTTTCTCATCAAGCAGATCGAACTCAAGGGCGCCGATTCCCTTTCGGCCGTCGCGCGTGAGCGCCTC CTGCAGCCGTACATCGGCCAGTGCCTGGGCGTGGCCCAGCTCAACGAACTGCTCAAGGTCATCACTGATCACTACATCGAAAAAGGCCTGGTCACCAGTC GCGCCTATCTGCCGCAACAGGACCTTTCCAGCGGGCATCTGCAAGTGCTGGTGGTTGAAGGTCGCCTTGAGGGCTTGAAAGGAGCCGAGGGCAGCGAACT GTCCAGCCGTGAGTTGGCCATGGCCTTTCCGGGTAAGACAGGCGAGCTGCTCAATCTGCGCGATATCGAGCAACTGGTGGATCAACTCAACCGCTTGCCA TCGAACCAGGCGCAGATGGAATTGGCGCCTGGCAAGGCCGTGGGCGGCAGCGAAGTACTGGTCAAGAACAACCCGAAAAAACCTTGGCGTGCTGGCCTGT GGCGCAGCAACGAGGGTCAGAAAAGCACCGGTGAGCAGCAATGGGGCAGCAGCTTTGAATGGGACAGCCCCCTGGGGCTGGCGGACCAGTTGATGCTGCG CGGCGGGCGTGACGCGGTCAGTGATCACCAGCGCATCTCCCATAACGAGACGCTCAACTACAACCTGCCAATGGGCTGGTGGAACTTCAACTACAACTTC AACCAGAGTCGCTATCGCTCCCAGGGCGAGGTCAACGGCTTTGGGTTCAAGCAGAGCGGTGATAGCGAGAGCCATCAACTGCGCGCTGAACGGGTGGTTC ACCGAGACGCCCTGAGCAAGACGTCGCTCAACGCCGGTCTGTCGCACCTGCGCACCAACAACTACATCGAGAAGAGCCGCCTGGGGGTCAGCAGCAACCG GCTGACCGAGGCCCAGTTCGGCATCAACCACGGGCGCCGGGTTGGTAATGCGTTCGTCAACCTCGACCTGGGTCTGCAGCAGGGCATCAGTGCCCTGGGC GCTCAGGATCAGGCAGAACGCGGTGAGCTCGGTAGCCGGCAGGCAAACGCCAGGTACCGAAAGTACACCGCCACGATCAGCTACTTGCAGCCCTTCAAGT TGTGGGGTGAGTCGCTGGTGTTCAGCAGCTTGATGACCGGTCAACGCAGCGAAGACATCCTCTTCAGCCCCCAGCGTATGAGCGTGGGCGGGTTGTCTTC GGTGCGTGGCTACAAGGACCAGACTTTATCCGGCGACAGCGGCGGTTACTGGCGCAACGACGTGCGCTGGAGCCGGGCGGTGACCTGGGACTGGTTACAC CCGCTGCTGAGCGAGTATGGCGCTGGCCTTGGCTACGACCAGGGTGTGATCCGTAATGATCGTTACAACGGTGAGGTCCACGGAAGGGCTTCCAGCAATT CCCTGGAGTTGTTCACCCGTGGCCAGCACATGGCCGCCAGCGTGACCTTCGCCCACTCCCTGGAACGCCCGGCCGCCTTGAGCGAGCACGAAGCGCCGAT CTACTTCCGCCTGGATTTCTACCTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTTCGCTTTTCCGAGACAGCCGACATGGACGTTAGCCAATTTGCCTTCCTGGCCCGCCAACCCTCCGCCAGGTTGAAAACCCGCGATCATTTCTGGGGC ATGCCCCGGCGGGGCCTGGCGTTCTTGCTGGCCAACGTCATGTTCTGGCAACCGTTGTGGGCCCAGGCCGAGGGTATTGTGGTCAGTGCCCCTGGCACCA CCCTGGGCCAGGCGGGCAATGGCGTGCCGATCGTCAACATTGCCGCGCCCAACGGCAATGGCCTGTCGCATAACCAATTCCAGGACTACAACGTCGGCCA GCAGGGGGTAATCCTCAACAATGCCACCAACCGCACCCAGGACACTCAACTGGGCGGCATCATTGTCGGCAACCCGAACCTGGATGGCCGTGCGGCCAAC ATCATTCTCAACGAGGTCAACGGCGGCAGCCCCAGCCAGCTCAAGGGCTACACCGAAGTGGCGGGGCAATCAGCCCATGTCATCGTAGCCAACCCTTACG
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MHPVFPGTRFLPGLLVFSALLTSTVHAATLTSPGDQDLIRDRQDRLLEEQRRRLEELKDLPGKPATPAAPAAPADSRCFLIKQIELKGADSLSAVARERL LQPYIGQCLGVAQLNELLKVITDHYIEKGLVTSRAYLPQQDLSSGHLQVLVVEGRLEGLKGAEGSELSSRELAMAFPGKTGELLNLRDIEQLVDQLNRLP SNQAQMELAPGKAVGGSEVLVKNNPKKPWRAGLWRSNEGQKSTGEQQWGSSFEWDSPLGLADQLMLRGGRDAVSDHQRISHNETLNYNLPMGWWNFNYNF NQSRYRSQGEVNGFGFKQSGDSESHQLRAERVVHRDALSKTSLNAGLSHLRTNNYIEKSRLGVSSNRLTEAQFGINHGRRVGNAFVNLDLGLQQGISALG AQDQAERGELGSRQANARYRKYTATISYLQPFKLWGESLVFSSLMTGQRSEDILFSPQRMSVGGLSSVRGYKDQTLSGDSGGYWRNDVRWSRAVTWDWLH PLLSEYGAGLGYDQGVIRNDRYNGEVHGRASSNSLELFTRGQHMAASVTFAHSLERPAALSEHEAPIYFRLDFYL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site