Pseudomonas putida PA14H7, AW38_RS00915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCTGAAGCAGGTGATGCCGCCCTTGATCTGCTCGGCAATGGCCAGGTCGGTGCCGTCACGGACGAAGTCTTCATCGACCCAGCGCCCTTCGGCCGGCC AGATGTGCTCTTCGAGCCAGGTCATCAGCGGCAGGTCGTCCGCCAGGCCGCGGAACAGGGTCATCGCCGCATGGCCGTGGGCGTTGATCAGCCCCGGGCT GAGCAGGCAGCCCGGCAGTTCGCGGGTTTCAGCGGCGATAAACGCCTGGGCCTGGCTGCGCGGGCCGATGAACACGATCTGCCCGTCACGGATGCCCAGG CCATGATCCTTCAAAACCACTCCGGCAGGTTCGACCGGCACCAGCCAGGTAGGCAGGAGCAGCAGGTCGAGCGGCGTAGCGGGTTTGGGCATGACAGGTT TCCCTGGGCGACTGAAGGTGAGGGCGAAGTATACCCGAGCGTCCGCGCCTGGGGCTCGCTATAATCGTCCGCTTTTGATGTCCGAATGATGGGGTGAGGC
|
|
| DNA Sequence for Gene |
>AW38_RS00915
ATGCGCGATCGACTAATGGCTGCAGAGAAGGTGAAAGCCATCGATTGGCGGGATGGCACCCTTTATCTGCTCGATCAGCGCGCGCTGCCGTCGGCGCAGG TCTGGCTGGCCTGCAGCGATGCCGTCGCAGTGGCCGAGGCCATTCGCACGATGGCGGTGCGCGGTGCCCCGGCCATTGGCATCAGCGCCGCCTATGGCCT GGCCATGGCTGTTGCTCAGCGCCTGGTCGCCGGCGGTGACTGGGAAATGGCCCTGGAAGAGGACTTCGAGCTGCTGGTGCATGCCCGGCCGACCGCCGCC AACCTGTTCTGGGCCCTGAACCGCATGCGCGAGCGCTTGCTGCGGCTCAAGGAAGGCGATGACGTGCAGGCCATCATGGAGGCCGAGGCCGTAGCCATCC ATGAGAGCGACCGCGAAGCCAACCTGACCATGGCGCAACTGGGCGTCGAGCTGATCCGCAAGCACCAGGGCAACGAGCAGGCCGTTCTGACCCACGGCAA CACCGGCGCCCTGGCCACCGGCGGCTTCGGTACCGCTCTGGGGGTGGTGCGCGCCGCTTACCTGGAGGGCATGATCGAACGCGTCTATGTCGATGAAACC CGCCCGTGGCTGCAGGGCTCGCGGCTGAGCGCCTGGGAGCTGGCCGGCGAGGGCATCCCGGCAACCATCACGGCCGATTCGGCGGCCGCCCATCTGATGA AAACCAAGGGCATCACCTGGGTGATCGTCGGCGCCGACCGCATTACCGCCAATGGCGATGTGGCGAGCAAGATCGGCACCTACCAGCTGGCGGTCAACGC CATGCACCATGGCGTGCGTTTCATGGTCGTGGCGCCGAGTTCGAGCATTGACATGAATCTTGAAAGCGGCGACGACATCCTTCTTGAAGAGCGCAGTGCC AGCGAGTTGCTGGAGCTCGGCGGTGAATCGCTGGGCGCCGATTTCGAGGCGTTCAACCCGGTGTTCGACGTGACCCCGGCCGACCTGATCGACGTGATCA TCACCGAGAAAGGCATCGTCGAGCGCCCGGACACAGTGAAGATGGCGCAACTGATGTGTCGCAAGCGTTTGCATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCTTTGCCCTCGTCTGCGGCCTGCTGTAGCGGCTAACGGGCGTTATCGACGAGCAGTAGGGTAGTAGTGCCGCAGGCTACTCCCACCCTCTGGGCGATT GTGGTAACATCCGACGGTTTCCAAGGCCGCCCCACGGGGCTGCCTTTACTGCGCAGATCCATGGCATAACTCGTTGATTTGTCGTAAGTCGTTGCAAGGA GTCACTTTGCAGCGGCGAGCTTCGTTCGTCCCATATGGATGTGACGAGGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAA TCCTCCCGGTCAATATCGAAGACGAGCTGAGACAGTCCTACCTCGACTACGCGATGAGCGTCATTGTCGGGCGTGCACTGCCCGATGCGCGTGATGGCTT GAAGCCCGTGCATCGCCGCGTTCTGTATGCGATGAGCGAACTGGGTAACGACTGGAACAAACCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATC
|
|
| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLMAAEKVKAIDWRDGTLYLLDQRALPSAQVWLACSDAVAVAEAIRTMAVRGAPAIGISAAYGLAMAVAQRLVAGGDWEMALEEDFELLVHARPTAA NLFWALNRMRERLLRLKEGDDVQAIMEAEAVAIHESDREANLTMAQLGVELIRKHQGNEQAVLTHGNTGALATGGFGTALGVVRAAYLEGMIERVYVDET RPWLQGSRLSAWELAGEGIPATITADSAAAHLMKTKGITWVIVGADRITANGDVASKIGTYQLAVNAMHHGVRFMVVAPSSSIDMNLESGDDILLEERSA SELLELGGESLGADFEAFNPVFDVTPADLIDVIITEKGIVERPDTVKMAQLMCRKRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|