Pseudomonas putida PA14H7, AW38_RS00425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PA14H7 Circular_chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGGCCTGATGCAGCCCTGGCGTTTTATCCGCATCACCCGGCGTGAGCTGCGCCAGCGAATCCAGGCCCTGGTGGAAGAGGAGCGGCTGCGTACTGCGC AAGCCCTGGGCGAGCGCTCCGACGACTTCATGAAACTCAAGGTCGAAGGCATCAACGACTGCGCCGAGCTGTTGGTGGCGGCGCTGATGGATGAGCGCGA AGCGCATATCTTTGGCCGCCGCACTTTGCCGGAAATGGACCTGGCGTCGTTGTCCTGTGCGATCCAGAACCTCTGGCTGGCCGCACGCGCCGAGGGCCTG GGGATGGGGTGGGTGTCGCTGTTCGAGCCCCAGGCCCTGGCCGAGCTGCTGGGCATGCCGGCCGGCGCCAAGCCGCTGGCGATCCTGTGCCTGGGCCCGG TGCAGGAATTCTACCCGGCACCGATGCTGGTGCTCGAAGGATGGACCACGGCGCGGCCGCTGCACGACATGCTGTTTGAAAACCAGTGGGGAGAGTCCTG
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| DNA Sequence for Gene |
>AW38_RS00425
ATGAGTGTGGCGTTGCTGACTGTGGCCGGGGTGGCGCTGGATGCGCTGCTGGGCGAGCCCAAGCGCCGGCATCCGCTGGTGGCCTTCGGGCGCCTGGCCG GGCGCCTGGAGCAGCGCTTCAATGCCGGCGGTCGCGGCTGGCGCAGCCATGGCGTCAGCGCCTGGTTCCTGGCGGTGGTGCCACTGACCTTCGTCGCCAT GCTGTTGTCCTGGCTGCCGTACATTGGCTGGCTGGTCGAAGTGCTGGCGCTGTACTGCGCCCTCGGCCTGCGCAGCCTCGGCGAACACGTGACGCCGGTG GCCGAAGCCTTGCGCCAGGGCGATCTGGAAAAAGCCCGGCAGCGCGTCGGTTATCTGGTCAGCCGCGAAACCCGCGAGCTGGATGAAACCGCCGTGGCCC GCGCCGCCACCGAGTCGGTGCTGGAGAACGGCAGCGATGCGGTGTTCGCCGCGCTGTTCTGGTTTGTCGTCGCTGGCGTACCGGGGGTAGTGCTCTATCG CCTGAGCAACACCCTGGACGCGATGTGGGGCTATCGTAATGAACGCTTCGAACGTTTCGGCTGGGCCGCAGCGAAGATCGACGATTTGCTCAACTACATT CCCGCGCGCCTGGTGGCCCTGACCTACGCACTGCTGGGCAAGACCCGCCTGGCCCTGAGCTGCTGGCGGCGTCAGGCGCCGTTGTGGGACAGCCCCAACG CCGGCCCGGTGATGGCGGCCGGGGCCGGGGCCCTGGGGGTCGAGCTGGGCGGCCCGGCGGTGTATCACGGTGAGCTGCACGAGCGCCCGCAACTGGGCGA AGGCCCGCCGGCCGATGCCGACGCCATCGAGCGTGGCTGGCGCCTGGTCTGTCAGGGCGTGTGGTTGTGGTTGCTGGTGTTGTGCCTGGGGGCTGAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACGGTGGTCGCCTGCAACGCGCAGTGCAGCAATACGGCATCGCCCGCGAAGACTGGCTGGACCTGTCCAGCGGCATTGCCCCGTGGCCGTACCCTATT CCCCAAATTCCGCTGCGGGCCTGGGCGCGCCTGCCTGAGACCGACGACGGCCTGGAGCAGGCGGCCTGCGAGTACTATCAGGTCGAGCAACTGCTGCCGG TGGCCGGTTCCCAGGCAGCGATCCAGGCCTTGCCGCGCCTGCGCCGCCCTGGCACGGTCGGCGTCCTCTCGCCATGCTACGCCGAGCACGCCGAAGGCTG GCGCCGCGCCGGGCATCGGGTGCGCGAGTTGCCGCAAGAGCAGGTCGATTACTACCTCGATAGCCTTGACGTGCTGGTGGTGGTCAACCCCAACAACCCC ACCGGCCAGCTGATTTGTGCCGAGCAACTGCTGGAGTGGCATGGACGTCTGGCCCGCCGTGGCGGCTGGCTGCTGGTCGATGAAGCCTTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLTVAGVALDALLGEPKRRHPLVAFGRLAGRLEQRFNAGGRGWRSHGVSAWFLAVVPLTFVAMLLSWLPYIGWLVEVLALYCALGLRSLGEHVTPV AEALRQGDLEKARQRVGYLVSRETRELDETAVARAATESVLENGSDAVFAALFWFVVAGVPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDLLNYI PARLVALTYALLGKTRLALSCWRRQAPLWDSPNAGPVMAAGAGALGVELGGPAVYHGELHERPQLGEGPPADADAIERGWRLVCQGVWLWLLVLCLGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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