Pseudomonas putida PD1, EX27_RS06650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00020.20_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGCCCACGGCCTGTCGGCTGCGGCACTGTTCATCCTGTCTGGCCAGCTGTACGAGCGCCTGCACACCCGTGACATGCGCCAGATGGGTGGCCTGTGG CACCGCATCGCTTACCTGCCGGCCATCAGCCTGTTCTTCGCAGCGGCATCGCTGGGCCTGCCAGGCACCGGCAACTTCGTCGGCGAGTTCCTGATCCTGA TCGGCAGCTTCGTGCATGTACCGTGGATCACCGTGATTGCCACCACCGGCCTGGTGTTCGGTTCGGTGTACTCGCTGATCATGATCCACCGCGCCTACTT CGGCCCGGCCAAGACCGACACCGTGCTGGCCGGCATGGACGGTCGCGAACTGATCATGGTTCTGGGTCTGGCGGTATTGCTGATCCTGCTGGGCGTGTAT CCGCAGCCGTTCCTCGACACCTCTGCCGCCACCATGAGTGGTGTGCAGCAGTGGCTCGGATCCGCTTTCACTCAACTCGCTTCGGCCCGGTAAGAGCGCT
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| DNA Sequence for Gene |
>EX27_RS06650
ATGGAATTCACCACTCAACACTTCATCGCATTGGCGCCGATGCTGATCACCACCATCACCACGGTGGTGGTGATGCTGGCGATCGCCTGGAAGCGCAACC ACTCGCAGACCTTCCTGCTGTCCACCGTGGGCCTGAACCTGGCCCTGCTGTCGCTCCTGCCGGCGCTTAAGGTCGCGCCGCTGGCGGTCACCTCGCTGAT CACCATCGACAAATTCGCCTGCCTGTACATGGCGATCATCCTCGTGGCGACGCTGGCCTGCGTCACCCTCGCCCACGCCTACCTCGGCGAGGGCTCCAAG GGTTTCCCGGGCAACCGTGAAGAACTGTACCTGTTGCTGCTGATGTCGGCCCTCGGTGGCCTGGTGCTGGTCAGCGCCAACCACCTGGCCGGCCTGTTCA TCGGCCTGGAGCTGTTGTCGGTACCGGTCTACGGCCTGGTGGCGTATGCCTTCTTCAACAAGAGATCGCTGGAAGCTGGCATCAAGTACATGGTGCTGTC GGCCGCAGGCTCGGCTTTCCTGCTGTTCGGCATGGCCCTGCTGTACGCCGACGCCGGCAGCCTGAGCTTCGACCAGATCGGCAAGGCCCTGGCTACCACC AGCATGCCAAGCCTGGTGGCCCAGCTGGGCCTGGGCATGATGCTGGTCGGCCTGGCCTTCAAGCTGTCGCTGGTGCCGTTCCATCTGTGGACCCCGGACG TGTACGAAGGCGCTCCGGCACCGGTCGCCGCGTTCCTGGCAACCGCCAGCAAGGTGGCAGTATTCGCTGTTGTCGTACGCCTGTTCATGCTCTCCCCTGC TGCCAGCAGCGGCGTGCTCAGCACCGTACTGGCGGTGATTGCCGTAGCCTCGATCCTGATTGGTAACCTGCTGGCGCTGACCCAGAGCAACCTCAAGCGT CTGCTGGGTTACTCGTCCATCGCCCACTTCGGTTACCTGGTCATCGCGTTGGTCGCCAGCAAGGGCCTGGCCCTGGAAGCCATGGGCGTTTACCTGGTTA CCTACGTGATCACCAGCCTGGGCGCTTTCGGCGTCATCACCCTGATGTCCTCGCCATACGGCGGCCGTGACGCCGATGCCCTGTACGAGTACCGCGGCCT GTTCTGGCGCCGCCCGTACCTGACAGCTGTACTGACCGTGATGATGCTGTCGCTGGCGGGTATCCCGCTGACCGCCGGCTTCATCGGCAAGTTCTACATC ATCGCTACCGGCGTCGAATCGCACCTGTGGTGGTTGGTTGGTGCGCTGGTGATCGGTAGCGCCATCGGCGTGTACTATTACCTGCGCGTCATGGTTACCT TGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTGAAGTGGGAACAGCGCACCGGCGGCGTCATGCTGCTGGCTATCGCCATTCTCGCTTT CGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAAATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACCCCAGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACTGGTGCCTCACTCACTC GGGCTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTGGGGGAGAGTT CATGGGTCATTTCGAATTCGGCGCGCACTGACCAGCCACACGCCTCGGTGGTGCATTGCAAATAAGCGATTCGCAGGAAAATATGGCGCCCTTCGCTAGT ACGTATGCGCATCCGGCTGTGGCAATGCGGGCAAACAAGCTTGTAAGTACTCACGGCAAGTACCTGCTAGCATTGCCCAGGCTAGCCTGTGTATCAGTAT TGGCTGCAACTGTGGGTGTATTCTTCAATTTGATGGTTCTCATTGCAGAAGTGCTCCTTAAAACGCAGGGCTGTATTCATAACGAGTAGTTTAAGCCCAT
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| Amino Acid Sequence |
>NADH:ubiquinone oxidoreductase subunit N
MEFTTQHFIALAPMLITTITTVVVMLAIAWKRNHSQTFLLSTVGLNLALLSLLPALKVAPLAVTSLITIDKFACLYMAIILVATLACVTLAHAYLGEGSK GFPGNREELYLLLLMSALGGLVLVSANHLAGLFIGLELLSVPVYGLVAYAFFNKRSLEAGIKYMVLSAAGSAFLLFGMALLYADAGSLSFDQIGKALATT SMPSLVAQLGLGMMLVGLAFKLSLVPFHLWTPDVYEGAPAPVAAFLATASKVAVFAVVVRLFMLSPAASSGVLSTVLAVIAVASILIGNLLALTQSNLKR LLGYSSIAHFGYLVIALVASKGLALEAMGVYLVTYVITSLGAFGVITLMSSPYGGRDADALYEYRGLFWRRPYLTAVLTVMMLSLAGIPLTAGFIGKFYI IATGVESHLWWLVGALVIGSAIGVYYYLRVMVTLYLVEPNLRRHDAPLKWEQRTGGVMLLAIAILAFVLGVYPQPLLEMVQQAGLQLIG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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