Pseudomonas putida PD1, EX27_RS06540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PD1 EX27DRAFT_scaffold00019.19_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGTGCGTGGCGTTCAGTTCGCCATTGGCCTGCAGGGTGTTGAGCATCTGGCCCTGGGGGAACTGGCGCATCTTCAGCACATACTCGATGGCATCACCTTC GCCACCGATCTGCGGTGCGTCGACGCTACCGGTGATCGGTAGCACTTCCAGGTACAGGCCTTCGGTCAGGCGCTGGTTCAGGCGCAATTCCTCGTTACAG AAATGCTGGCGCTGGTCCAGTCCGGTGAAGTCCAGGAAGCCGAAATTCATCGGTTTCTTGATCTTGTAGGCGTATTCGCCAGTGAGCAGGACCCAGGAGA TATGCGTCTCGATGAGCTGAAACCCCTCCACGGGGTGAGGGTACAGGGCAGGGTTCTGCAACGCAGTAATAAGAGCTTGGCTCACGGCAAATCCTTCCGG GGCAAGGGAATTCGAATGCGCCATTATGGTCAATGGTGCCGTCCCTGCCTACCGCCGGGCCGTCTGCCCAGCCTTTATAAAGTGCGTATAATCCGCCGCC
DNA Sequence for Gene
>EX27_RS06540
ATGACCCGAACCCGAAATCCCCGCACCCCTCAGAAACGCCCGACCGGCCGCTCCCGCGCCTGGCTGGGCTGGGCTTTGAAGCTCAGCCTGGTTGGCCTGG TGATCGTCGCCGGCTTCGCGGTTTACCTCGATGCCGTCGTCCAGGAAAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAAGTGTATGCCCGACCGCT GGAGCTGTTCACCGGTCAGAAGTTGAGCAAGAACGACTTCCTCACCGAGCTCGATGCGCTCGGCTACCGTCGCGAAAGCGCGGCCAACGGCCCGGGCGCT GCGTCCGTCAGCGGCAATACCGTCGACCTCAATACCCGTGGCTTCCAGTTCTACGAGGGCATGGAGCCGGCGCAGTTCGTCCGTGTACGCTTCTCTGGCG ATTACGTTGCAGGCCTTTCCGGTGCCAATGGCAAGGCGCTTGACGTGGTGCGGCTGGAGCCGCTGATGATCGGTGGCATCTACCCGAAAAATCTCGAAGA TCGCATCCTGATCAAGATCGATCAGGTACCCAAATATCTGCTCGAAACCTTGGTGGCCACGGAAGACCGCGAGTTCTACAGTCACTTCGGCGTGTCGCCA AAGTCCATCGTCCGGGCCATGTGGGTCAACACGTCGTCCGGCTCGATGCGCCAGGGTGGCAGTACCCTGACCCAGCAGTTGGTGAAGAACTTCTACCTCA GCAGCGAGCGCAGCCTCAGCCGCAAGCTGACCGAGGCGATGATGGCGGTCCTGCTCGAACTGCACTACGACAAGCGCGAAATCCTTGAGGCCTACCTCAA CGAGGTGTTCGTCGGCCAGGACGGTCAACGCGCGGTGCACGGCTTTGGTCTGGCGAGCCAGTTCTTCTTCAGCCAGCCGCTGTCCGAGCTGAAACTGCAT CAGATCGCCCTGCTGGTGGGCATGGTCAAAGGCCCGTCCTACTACAACCCGCGGCGTCACCCCGAGCGTGCCTTGGCTCGCCGCAACCTGGTGCTCGACC TGGTGGCCGAGCAGGGCGTGGCCAGCCAGGCAGAAGTCGATGCGGCGAAGAAAATGCCGCTGGGCGTGACCAAGCGTGGCAGCCTGGCCGACAGCTCGTT CCCTGCCTTCCTCGACCTGGTCAAGCGACAGTTGCGCCAAGATTATCGCGACGAAGACTTGACCGAAGAAGGCCTGCGCATCTTTACCAGCTTCGACCCT ATCCTGCAGATGAAGGCCGAAACCTCGATGAGCGAGACCTTCAAGCGCCTGGCGGGCCGCAAGGGGGCAGACGATGTCGAAGCGGCAATGGTCGTGACCA ACCCTGAGACCGGTGAAGTACAGGCGCTGATCGGTAGCCGCCAGGCAGGTTTTGCCGGCTTCAACCGGGCCATTGATGCTGTACGGCCGATCGGCTCCCT GGTCAAACCGTCGGTATACCTGACTGCGCTGGAGCAGCCGAGCAAGTACACCCTGACCAGTTGGGTGCAGGACGAGCCATTTTCGGTCAAAGGGGCTGAC GGCCAGGTCTGGCGCCCGCAAAACTATGATCGCCGCCCGCATGGCACTATCTACCTGTACCAGGGGCTGGCCAACTCTTACAACCTGTCGACCGCCAAGC TCGGCCTGGAAGTGGGTGTGCCGAACGTGATCAAGACCATTGGTCGTTTGGGCGTGAATGTCGACTGGCCAGCGTTTCCGGCCATGTTGCTGGGGGCGGG TGGCATGTCGCCGATGCAGGTCGCAACCATGTACCAGACCATCGCCAACGGCGGCTTCAACACGCCGATGCGCGGTATCCGCAGCGTGCTCACCGCCGAG GGCGAGCCGCTCAAGCGCTACCCGTTCCAGATCCAGCAAACCTTCGACCCGGGTGCCATTTACCTGGTGCAGAACGCCATGCAGCGTGTAATGCGCGAAG GTACAGGGCGTTCGGTGTACAACACCTTGCCACGCTCGCTGACCCTGGCGGGCAAGACCGGTACCAGTAACGACTCGCGTGACAGCTGGTTCTCCGGCTT TAGTCAGGATCTGCTGGCCGTGGTGTGGATGGGCCGTGACGATAACGGCAAGACACCGTTTACCGGCGCCACCGGCGCCTTGCAGGTGTGGACCAGCTTC ATGAAGAAAGCCGACCCGCTGCCGCTGGATATGCCGCAACCGGATAACGTGGTGCAGGCCTGGATCGACCCTTACACAGGCCATGGGTCTGATGCCAGCT GTCCGGGAGCGGTGCAGATGCCGTATATTCGCGGGAGTGAGCCGCCGGCCGGCGCAACCTGTGGCGGCGAGCAGGACCCAGTCGAATCGGTAATGGACTG GGTCAAGGGCTGGATGAATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACAGGCTGCATTGATGAGGTGTGACGTGAACAAGTGGCTGTTTCCTGCCGTGACGGCGTTGGCTGTGCTCCAGGGGTGCTCCAGCGTCCCGCGTGGCA ATATTCCGGTGGTCGACTCGAGCACCCGCGTGTCCAACAGCGAACGCGTGACGGCCAACCGCTCGGCGGGTGGCTATAACACCGGCACCGCCCAGGCGCA GACGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCATCGGGCATCCAGACATTCCCGGCGGGCAATGGCGCTGCGCCGATC AGTACCTCGCCGATCACCCCGGGGCCGATCAGTGCAGGGCCTGTCAGTTCGGCGCCGATGACCACCAATCCCAACCCGATTGCCGATGAACCCTTCGACA TCGCTGCGATGAACAGCACCCCGCAAAGCGCCAGTGCGCCAACCGGTATTCCGCGCAGCGCCGCCGCCGGTGGCCTGTCGGCCGACGAGCAGCTGGACGG
Amino Acid Sequence
>penicillin-binding protein
MTRTRNPRTPQKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKNDFLTELDALGYRRESAANGPGA ASVSGNTVDLNTRGFQFYEGMEPAQFVRVRFSGDYVAGLSGANGKALDVVRLEPLMIGGIYPKNLEDRILIKIDQVPKYLLETLVATEDREFYSHFGVSP KSIVRAMWVNTSSGSMRQGGSTLTQQLVKNFYLSSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QIALLVGMVKGPSYYNPRRHPERALARRNLVLDLVAEQGVASQAEVDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAETSMSETFKRLAGRKGADDVEAAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYTLTSWVQDEPFSVKGAD GQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNVIKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MKKADPLPLDMPQPDNVVQAWIDPYTGHGSDASCPGAVQMPYIRGSEPPAGATCGGEQDPVESVMDWVKGWMN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site