Pseudomonas putida PD1, EX27_RS05490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00017.17_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACCGTTTCATGCGCGCCTACAACAGCGAAAGTGGTGAATTGCTGTGGGAAGAACGCCTACCGGCCGGCAACCAGGCGTCGCCCCTGACCTACGTGAG CGAAGGCCGCCAGTACGTGGTTGCCGTGGTCGGCGGGCATGACCGGATTCCGACCAAGCTGGGTGACAGCATCATTGCCTGGGCGCTGCCGGAGAAATAG CGCTGCCTTTCAGGGGCAGCCATCGGTTACTTCCGCTCCACCGGCCCTCTGTTCGAGGAGTTTGCCATGCCTGTGGGGGCGGGCTATCCGCGAAGCAGCC AGCACGCATTTCACCTGCGCCCCACCCGCAAAACGCTTGCTCAGGCCGCATACCACGCTAACATCAAACCTCTGGAAGATTGATACAGCGCATTCAAGTT GCGGGGTCAGGCAACCGATACACTGCTAACGGTCGGCCGGTAGTGTATCGTCATCGTTGATGGCAAAATGATGCCATGCGCATGGATTAAGGAAACCCCA
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| DNA Sequence for Gene |
>EX27_RS05490
TTGAAGCTGGAATTGCGGAACAGCTTGTCGGTCAAGTTGCTCAGGGTCGTGCTGCTGTCGGCGTTGGCGGTTGGCGTCGTGCTCAGCTGTGCGCAAATCG TCTATGACACCTACAAGACCCGCCAGGCCGTGGACAATGATGCCCAGCGCATCCTCGACATGTTCCGCGATCCCTCGACCCAGGCGGTTTACAGCCTCGA CCGTGAAATGGGCATGCAGGTCATGGAAGGCCTGTTCCAGGACGAATCAGTGCGCATGGCCTCCATTGGCCACCCCAACGAAACCATGCTGGCAGAAAAG TCCCGCCCGCTGCAGGACATGTCCATGCGCTGGCTCACCGACCTCATCCTCGGCCAGGAGCGCACCTACACCACACAACTGGTCGGCCGTGGCCCTTACA GCGAATACTACGGCGACCTCAGCATTACCCTCGATACCTCCTCCTACGGCAAAGATTTCCTGATCAACGCGGTGATCATCTTCATATCCGGCGTGCTGCG GGCCATGGCCATGGGCCTGGTGCTTTACCTGGTCTACCACTGGCTGCTGACCAAACCGCTGTCGAAGATCATCGAGCACCTCACCCAGATCAACCCTGAC CGCCCCAGCCAGCACCAGATACCGCTGCTCAAGGGCCACGAGAAAAACGAACTGGGCCTGTGGGTGAACACCGCCAACCAGTTGCTGGCCTCGATCGAGC GCAACACCCATCTGCGCCACGAGGCGGAAAACAGCCTGCAACGCATGGCCCAGTACGACTTCCTTACCGGCCTGCCCAACCGCCAGCAACTGCAGCAGCA ACTGGACAAGATCCTCGTCGACGGCGGCCGTCTGCAGCACCGTGTGGCAGTGCTGTGCGTTGGCCTGGACGACTTCAAGGGTATCAACGAACAGTTCAGC TACCAGGTCGGTGACCAGTTGCTGCTGGCCCTGGCCGATCGACTACGCGCCCACAGCGGCCGCCTGGGCGCTCTGGCGCGGCTGGGCGGCGACCAGTTCG CCCTGGTACAGGCCAATATCGAGCAGCCCTACGAGGCTGCCGAACTGGCGCAAAGCATCCTTGATGACCTGGAAGTACCGTTCGACCTCGACCACGAGCA AATCCGCCTGCGCGCGACCATCGGCATCACCCTGTTCCCCGAAGACGGTGACAGCACCGAAAAACTGCTGCAGAAAGCCGAACAGACCATGACCCTGGCC AAGGCCCGCTCGCGCAACCGCTACCAGTTCTATATCGCCAGCGTCGACAGCGAGATGCGTCGCCGTCGCGAACTGGAAAAGGACCTGCGTGAAGCCCTGC CCCGCAACCAGCTTTACCTGGTGTATCAGCCACAGATCAGCTACCGCGACCACCGGGTGGTTGGCGTAGAGGCCCTGCTGCGCTGGCAGCACCCGGAACT GGGCATGGTGCCACCCGACCAGTTCATCCCCCTGGCCGAGCAGAACGGCAGCATCATCAGCATCGGCGAATGGGTGCTTGACCAGGCCTGCCGGCAACTG CGCGAATGGCACGACCAAGGCTTCAGCGACCTGCGCATGGCGGTCAACCTGTCTACCGTGCAACTGCACCACAGCGAGCTGCCACGGGTGGTCAACAACC TGCTGCAAGCCTATCGCCTACCACCGCGCAGCCTGGAACTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCACCTGTTGAG CCTGCGCCGCTCCGGGGCGCTGATTGCCATCGACGACTTCGGCACCGGCTACTCGTCCCTCAGCTACCTGAAGTCGCTGCCCCTGGACAAGATCAAGATC GACAAGAGTTTCGTTCAGGACCTGCTCGACGATGATGACGACGCCACCATCGTTCGCGCCATCATCCAGCTGGGCAAGAGCCTGGGGATGCAGGTGATCG CCGAGGGCGTGGAAACGGCCGAGCAGGAAACCTACATCGTTGCCCAGGGTTGCCACGAGGGCCAGGGCTACCACTACAGCAAGCCTCTTTCGGCCCGTGA ACTGACCCACTTCCTCAAACAAGCGCAACGCAACCGGGTTTCGGTGTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCACCTGCCCGGTTACAGGCCGTGCCCCTGATTTACATGAATTGCGCGCCCGCCTCTTTACAGCAAATGCAAATCTTTCGCATGATGTTGTAGTTTTG CGTGCCACGGCGCACGGTCCACCCCTTTGGTCCAACCACACGATGCAGGAAAACCAATAATGATTCGAATGCCTCTGGCCTCCGCCAGTCTGCTGGCCAT TGCCATCGCCCTCGCCGGTTGCGGTGAAGGCAAGGACGAAAAAGCCGCCGCGCCGCAAGCCCAGGCACCTGCTGCAGCCACCACCGCTGTTGCGCCAGGG GCTGTCGACGAAGCAGCCGGCAAAGCCGTGGTCAAGCATTACACCGACATGGTCTACGCCGTGTACAGCGACTCGCTGAGCACTGCCAAGACGCTGCAGA GCGCAGTCGACGCGTTCCTGGCCAAGCCCAACGACGAAACCCTGAAAGCCGCCAAGGAAGCCTGGTTCGCCGCGCGCGTACCGTACCTGCAGAGCGAAAC
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVDNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEK SRPLQDMSMRWLTDLILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGKDFLINAVIIFISGVLRAMAMGLVLYLVYHWLLTKPLSKIIEHLTQINPD RPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFS YQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQL REWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTHFLKQAQRNRVSVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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