Pseudomonas putida PD1, EX27_RS25665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00015.15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACGGGTCGGGCACGTGCTCGAGCATTTCCAGGCAGGTGACCACGTCGAACTGTTCGGGCATTTCCTCGGCCAGGGCTTCGGCGGTGATCTGCCGGTAT TCCACCTGCACGCCGGACTCCAGCTGGTGCAGCTGAGCCACCGCCAGTGGCGCCTCGCCCATGTCGATACCGGTGACCGTGGCGCCGCGCAGGGCCATGG CTTCGCTGAGGATGCCGCCACCACAACCCACGTCCAGCACTTTCTTGCCGGCCAGGCTGACGCGCTCGTCGATCCAGTTGACGCGCAGCGGGTTGATTTC GTGCAGCGGCTTGAACTCGCTTTCGCGGTCCCACCAGCGGTGGGCCAGCGCTTCGAACTTGGCGATTTCGGCGCGGTCGACGTTGCTCATTGAACAGTCC TCTGAAACTTCGCAAAATTGCGCCGGAGTATACCCGAGCGCTTGGCCGCGAGGGTCGCTATAATCGCCGGTTTTTGATATCCGAATGACGGGGAGAGGCG
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| DNA Sequence for Gene |
>EX27_RS25665
ATGCGCGAGCGACTTTTGGCGGCGGAGAAGGTGACCGCGATCCGCTGGCAGGGCGGCGCCTTGCACCTGCTCGACCAGCGCCTGCTGCCGTCGGAGGAGC GTTGGCTGGCCTGCGACAATGTTGCGCAGGTGGCCGCAGCCATCCGTGACATGGCAGTGCGCGGCGCCTCGGCGATCGGTATTGCCGCAGCTTACGGCCT GGTACTGGCCCTTGAAGAGCGGCTGGCCGAAGGCGGCGATTGGGAAATGGAACTGGAAGACGACTTTCTCACCCTCGCCGAAGCGCGTCCTACCGCCGCC AACTTGTTCTGGGCGCTGAACCGCATGCGCGAGCGTCTGCTGCGCCTGCGTCCGGAAGAAGACGTTCTGGCGGCGCTGGAGGCCGAAGCGGTGGCCATTC ACGAAAGCGACCGTGAGGCCAACCTGACCATGGCCCAGCAGGGTATCGAGCTGATCCGTCGTCATCAGGGCAATGCCCAGGCCCTGCTCACCTTCGGCAA CGCCGGCGCCCTTGCCAGTGGCGGCTTTGGCACCGCACTGGGGGTGATCCGTGCCGGCTACCTGGAAGGCATGGTCGAGCGGGTTTATGCCGGTGAGACT CGCCCTTGGCTGCAGGGCTCGCGCCTGACGGCCTGGGAGCTGGCCAACGAGGGAATTCCGGTGACCCTGTGCGCCGACTCGGCGCTGGCGCATCTGATGA AGACCAAGGGCATCACCTGGGTGGTGGTGGGCGCGGACTGCATCGCTGCCAATGGCGACGTGGCCAGCAAGATCGGCACCTACCAGTTGGCGGTCAGCGC CATGCACCATGGTGTGCGCTTCATGGTGGTGGCGCCGAGCACCAGCATCGACCTGAACCTGGCAACCGGCGAGGATATTCCCCTGGAAGAGCGTGACGCC GACGAGTGGCTGGACTTTGGCGGTGCCCCGGCGGTACGGGATGTGCAGGTATTCAACCCGGTGTTCGACGTGACCCCGGCCGACCTGATTGACGTTATCG TGACCGAACGGGGTGTTGTCGAGCGCCCGGATACCGCCAAACTGGCCCAGTTGATTTGCCGCAAGCGCCTGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCCGGTAGAACGCGTACTTTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGGGATGTCGGCGAAGAAGCAAAAATTGCCGGGGC TGCTGTGCAGCCCTATCGCGACACAAGGCCGCTCCCACAATGACCGTGCACTGCCGTACAGATCTCCCCACCGCCCCCGCCTTTGTGATAATATCCGGCA GTTTCCAAGACCGCCCAAAGTGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTGATTTGTCGTAAGTCGTCGCACCCTTATGCGCTGCGGCGGC GAGCTTCGTTCGGCCCTTGATGGAGCTGCGAAGTTTCACCAGAAAAAGGAATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATAT CGAAGACGAACTGAGACAGTCTTACCTCGACTACGCGATGAGCGTGATTGTCGGGCGAGCGCTGCCCGATGCGCGTGACGGCTTGAAGCCCGTGCATCGC
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| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRERLLAAEKVTAIRWQGGALHLLDQRLLPSEERWLACDNVAQVAAAIRDMAVRGASAIGIAAAYGLVLALEERLAEGGDWEMELEDDFLTLAEARPTAA NLFWALNRMRERLLRLRPEEDVLAALEAEAVAIHESDREANLTMAQQGIELIRRHQGNAQALLTFGNAGALASGGFGTALGVIRAGYLEGMVERVYAGET RPWLQGSRLTAWELANEGIPVTLCADSALAHLMKTKGITWVVVGADCIAANGDVASKIGTYQLAVSAMHHGVRFMVVAPSTSIDLNLATGEDIPLEERDA DEWLDFGGAPAVRDVQVFNPVFDVTPADLIDVIVTERGVVERPDTAKLAQLICRKRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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