Pseudomonas putida PD1, EX27_RS25605

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PD1 EX27DRAFT_scaffold00015.15, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AATTGGTTATCACCCGGAGATTATCCTTGCTGGTCGGCGCTTGAATGACTCGATGGGGCGCTACGTTGCCTCGCAGTTGGTCAAGGCGATGCTCAAGCGC CGCCTTCAGGTTGAAGGTGCTCGCGTGCTGGTTATGGGCTTGACGTTCAAGGAAAACTGCCCGGATCTGCGCAATACGCGCATCGTTGATATTATTACCG AGTTGAGTGAATACGGCATTGCGGTCGATGTATTTGACCCTTGGGTTGATGTCGCTGAGTCGCAACATGAATATGGCATCACACCGGTGGCCACACCGCC GGCGGGCGCCTATGACGGCATCGTTGTGGCCGTTGCGCATCAGGAGTTTAAAGCGCTCGGTGAGGCTGCCATTCGTGCTTATGGCAAAACTAATCATGTG CTCTACGACTTGAAGTATCTGCTGGATGCTGCAGGTTCCGATATTCGCCTTTAGTTGGTAGCGATGTCAGCTTTGTCAATTATTGTAGGTGGCGTTGAAA
DNA Sequence for Gene
>EX27_RS25605
ATGACCGCATATGAGTCGCTTCAGAAACTGCTTCCCCAAGCCCCCAAAAGGTGGCTTATCACTGGGGTGGCAGGGTTTATCGGTTCCAACCTGCTTGAGC ATCTGCTTTTGCTCGACCAGACAGTGGTAGGTTTGGATAACTTTGCCACGGGCCATCAGCGTAACCTGGATGAGGTCAGATCCAACGTGAGCGCCCTGCA ATGGAGCCGTTTCACCTTTATTAAGGGTGATATTCGCGATCTGAATGATTGCCAGGCTGCCTGTCGCGGTGTGGACTATGTATTGCATCAGGCGGCTCTG GGGTCAGTGCCGCGTTCGCTGAATGACCCAATTGCTACTAATGCAACCAATATCGACGGTTTCTTGAATATGTTGGTTGCTGCACGTGATGCGGCAGTCA AAAGCTTTACTTATGCGGCAAGCAGTTCGACGTATGGTGATCATCCAGGGTTGCCAAAAGTAGAGGATGTGATCGGTAAACCTTTATCGCCGTATGCGGT GACAAAGTATGTGAATGAACTGTATGCCGAGGTCTTCTTCAGGTCTTATGGTTTCAACAGTGTTGGCTTGCGCTATTTCAACGTATTCGGCCGTCGGCAA GACCCGCAAGGTGCGTATGCGGCGGTAATCCCGAAATGGCTTGCTTCGATGATCAGTGCGGACGACCTGTTTATCAATGGCGACGGCGAGACCAGTCGCG ATTTCTGCTTCATTGAGAACGTGATACAGATGAATCTTCTGGCCGCCACCAGCTCCGATCCTGCGGCAGTTAACCAGATTTACAACGTGGCAGTTAGTGG CCGTACTTCCCTCAATCAATTATTCGAGGCGTTGCGTAGAGGCTTGGAAGAGAACGGTATAGTCTATTCAAAAGCGCCGGTGTACCGTGATTTTCGTGCC GGCGATGTGAGGCATTCGCAGGCGGATATATCCAAGGCGCAGAAGCTATTGGGTTATGTGCCGGCCTATGATGTCAGCCGGGGAATTTCCAAAGCGATGC CTTGGTACATTAAATTCCTTGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAGAGCGCCTTTGTAGCTGCTTTAAAATTACAATGGCTCGAGCCGGCTGGTGCCGTAAACCAGGTCAAGCTTGGCTGACATCAGTGTGAGGGGATTGGGT GCATTACAGAAATATCATTTGGAATCTGCTCGGTCTAGGCTTGCCGCTTATCATCGCTGCGCTGACAGTTCCGGGCTTGATTTCAATAGTAGGTACTGAG CGTTTTGGTCTTCTTGCACTCGCCTGGGGGTTAATCGGATATGCCGGTGCGCTCGACCTCGGAATTGGTCGTGCGCTGACCCAGCGTATTGCCTCCCTGC GAGGCGACCCGCAAGCTGCGGTCATCAGCGATGCCGTTGCAACTGCAGTTACGTTGACCTCGGTGGTCGGTGTCGTAGGATTGGTGGCAATTGCACTGGG CTCGTTTGCGGGTGTGCAGCAGTTTATTCCACGCCAGAGTATTCCTGCTGCAGAGATTACGTTTTCCCTGCTGCTCCTGGCTCTTGCGCTGCCAATGCAA
Amino Acid Sequence
>Vi polysaccharide biosynthesis protein VipB/TviC
MTAYESLQKLLPQAPKRWLITGVAGFIGSNLLEHLLLLDQTVVGLDNFATGHQRNLDEVRSNVSALQWSRFTFIKGDIRDLNDCQAACRGVDYVLHQAAL GSVPRSLNDPIATNATNIDGFLNMLVAARDAAVKSFTYAASSSTYGDHPGLPKVEDVIGKPLSPYAVTKYVNELYAEVFFRSYGFNSVGLRYFNVFGRRQ DPQGAYAAVIPKWLASMISADDLFINGDGETSRDFCFIENVIQMNLLAATSSDPAAVNQIYNVAVSGRTSLNQLFEALRRGLEENGIVYSKAPVYRDFRA GDVRHSQADISKAQKLLGYVPAYDVSRGISKAMPWYIKFLA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site