Pseudomonas putida PD1, EX27_RS24090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00013.13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGGCTGGATTCGCCAGTGGCTCCAGCGCAAGCTCGGCAATGCCCATGATGCGGCGGAACTGGCCCAGGATGTATTTGTGCGGCTGTTGTCCAAACCCC GTGTGTTCAATGACCACGAGCATGCCCGTGCGTACCTGGGACGTATGTCGCGCAATGCGTGTGTGGACTTCTGGCGACGGCGGCGGGTGGAGCAGGCTTA TCTGGAAGTGCTGGCCGCCCAGCCCGAGCAACTTGCGCCTTCGCTGGAACATCAGGCCGTTATCCTCGAAACCCTCGAGCAACTGCAGGCAATGTTCGAG CGTATGCCCCAGCGCGTGGCCGAGGCATTTTCCATGGCGCAGTTGCAGGGCATGAAGCAACGCGAGATCGCCGAGCAGTTGGGCGTGAGCGAGCGCAGTG TGAACAGTTACCTGGCTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGGCGTA
|
|
| DNA Sequence for Gene |
>EX27_RS24090
CTGCAAGCGGCTGCCGGTTGGTTCGCGCGGCTGCACGCGGCGCAGAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATGCGCGGC ATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGACAGCGTGCGCCG TGACCGGCATTCGCGCAGGGCCGTGCTCGGTAGCCTCTGTGTGGCGGGTGTGGCAGGTGTGTTGGGTTGGGGCGGATGGCAGCGCGGTTGGGTCGACTCG CCACGTGCCTGGTTCGCCACTTACCGCACCGGCCTGGGTGAGGTGCGGCCGGTCACCCTGGCCGATGGAAGCCAGCTGTGGCTGAACGGCGGGACGGCGC TGGATGTGCAGTTCGATGAGGGCTCAAGGCAATTGCGCCTGTATCGCGGAGAAATCCTGATCGAGTCCGGCAAGGACCCACGTCCACTTTCCGTAGTGAC GAGGGCTGGGCGGGTGCAACCGCTCGGCACGCGCTTCAGTGTCCGGGACCAGGGGTTGCAGACCACCTTGAGCGTATTTGCCGGCGCCGTGCAGGCAACT TGCTCCGGCAGCGGCAGGCAAACCACGTTGCAAGCCGGGCAAATGATGGTGTTCGACGCGCAGCAAGTCGGCGCCCCATCAACTGCACAACGCTTGCGCG AGGATTGGAGCCGCGGTGTATTGGTGGCGGAGGACATGCCGCTGGTTCAGATGATCGACATTCTGCGCGATTACCGCCATGGCCACTTGGGCATCGACCC GGCGATTGGCAGCCTGCGTGCGGTCGGCACCTTCCCGTTGCTCGACACCGACCGTGCGTTGGCCATGCTCGAGCGTGCGTTGCCCATCCGGGTTGTGCGT ACCTTGCCTTGGTGGGGCTCCATCGAGGCGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGTTTTTTCAAAATTCTTTTTCCGGTTTTGCGACGCTCATTCGCTTGGTGGGATGACGCTACTTCATCCTCTTTGCGAAAGGATTCTTCCATGCTGCTTC GCGACTCTGCTTCCGCGCACCGTCATCCGTTGGCCCTGGCCATTTTCCTAGCCCTTGGCGGCCACGTTGCCGTCGCCGAGGCCGACAGCAGTGCTGCAGC CCAACGCGTGGTATTCGACATTCCAGCCGGGCCATTGGCGCGCCAACTGAACCTGTTGGCCAGCCAGGCCGGGCTGTTGATCGGCGGTGATGCGGCGCTG ACGGTCAACAAGCAGAGCCAGGCGGTGCATGCCTTGAGCGTAGAGGTGGCGCTTGCGCAGATGCTGGCCGGCACCGGTGTGGCGGCCGTGCGCACGGGTG AGCGGGAGTTCCAGCTGGTGAGCCAGGCCGAAGATGCGGCAGGCGCGGTGACCTTGGGCGCCACCACCGTCTCGGGCCAGGGCCTGGGTGCTGTGACGGA
|
|
| Amino Acid Sequence |
>transmembrane sensor
MQAAAGWFARLHAAQNDAAIQAQWHAWLNEDARHRLAWSYVENINQRFGGLSGQAEQARQVFDSVRRDRHSRRAVLGSLCVAGVAGVLGWGGWQRGWVDS PRAWFATYRTGLGEVRPVTLADGSQLWLNGGTALDVQFDEGSRQLRLYRGEILIESGKDPRPLSVVTRAGRVQPLGTRFSVRDQGLQTTLSVFAGAVQAT CSGSGRQTTLQAGQMMVFDAQQVGAPSTAQRLREDWSRGVLVAEDMPLVQMIDILRDYRHGHLGIDPAIGSLRAVGTFPLLDTDRALAMLERALPIRVVR TLPWWGSIEAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|