Pseudomonas putida PD1, EX27_RS21570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00011.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCATGGCGCGGCCGTCGACCATCACATTGCCGGTGATAATCAGGCCGGCACCACCGTCGGCCCACGCTTGATAGAGACGCATGAGTGCTTCGGAAGGCG CCTGGTCGGCATCCGCCATGTTCTCTTCCATGGCGGCTTTGGCGATTCGGTTCTTGACGGTCGAACCGTTGGGAAGCATCAGGGTGTCGAACACATTCAT GGAGCAGTCCTCAACTGGATATGCGGCCACCTTAAGTTTGAAGTCGACTTTAAGGTCAATACCTTTTTCAAGGTCAGTCGATTTTCAACGCGCCAGCCCC TGGCAAGTGTGTCACCCGATGGGCGCCCGACAACCGAGTGGGGTGTTCAATCGAAGTCTTGGCAGCACCGGGTGAACAGCTCGAGCGCGAATCAAACCCC AGCGCCAGATGCGTCGGAAATTATTTGCAGCATTGGGGATTGACCTTAAAGCGAGGTTTAAGGTGAGCATGCGCTGACCTGCTTGAGTGATGGAACTCGG
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| DNA Sequence for Gene |
>EX27_RS21570
GTGATGCTCAAGACCGTTGTTTCTTATGCGTTGGTACTGATAGGTAGCGCTTTCATGACATTTTCAACTGCTGGCACCGCCGCTTCCACAATGACTGCCA AGAATCGCCAAATGCTGGTGATTCTGACCAATCACGCCAGATATCCCTCACGCACCGATTCCACGGGGTTGTGGCTTACTGAGCTGACGCATTTCACCGA TGTGGTGGAGGCGGCTGGCTACAGCACAGTTTTTGCCAGTCCCAAAGGCGGTGCGGTGCCACTGGACGAGCGCAGTCTCGGTTGGCTGTACATGGACAAA GCCGCGCGTGAGCATTTGCAGTCCCCGGCCTTTCGCACTCGCTTGCAAAACACGCTGCCGATCGCCGATATCGATCCGTCCCAGTTCGGCGTCATCTACT TCACCGGGGGCCATGGCGTGATGTGGGACTTCCCCAATAATCCCGACCTGCGACGTGTCGCCGAAACCATCTACAACCAGGGTGACATCGTCTCGGCCGT CTGCCATGGCGTAGCGGGCCTGCTGGATCTGAAGGATGAAAAGGGCCAGTTGATCATCAAGGGCAAGAACATCACCGGCTTCTCTGATCGCGAAGAGCTG TTCTCCGGCATGAAAAGCCAGGTGCCCTTCTTCCTTGAGGACAAGTTGGTGAGTCAGGGTGCTCGGTACCGCAAAGGCTGGCTGCCATTCACGTCATTTG CCATCACGGATGGAAGGCTTGTCACCGGCCAAAACCCTCAATCGCCCAAAGCCGTAGCTGAAGCCGTGGTGGCGGTGCTCTCTGGCAACAACGTCGCTCG CTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCTCAAGCAGTTCCCACCCGCGGAGTAAGACCGATTGAAACTCGCACGCACCGTATTAACAGGATTGCTGTTCAGCTCAATTGCCAACCAAGGGTTGG CGGGGACGCCTGAAATGCTCACGCCGACTGAAACCAGCACAATCGAAATCGCAGGCCACCCAGTGCCGGTCGTCAAAGGCGGCCTGTACGACCGTTATCG CTCGAACCCGCCCTTGTCGGTGATTGCAGCAGAGCTGCCGGGTGTTGATTTGAGCTGGTTCAAAGGACTGCAAAAGCACAAGGTCGACATCGGCTTCGAG TCATACTCCCCGAACTTCTACTACCAGAACAGTCGGGTAACGGCTGTCTACACGGCCGACTTGGACGCACTTCGGGCATTGATGCCGCCGGAAGTACTAG CAACCGCATCCCCCCTGCAAGTCTGGCCAGGCCGGGGCTTGGTTGCGTTTACTGCATACACCTATGAGCATTGTGATAACGACGCCTATAACGAAGTGGC
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| Amino Acid Sequence |
>thiamine biosynthesis protein ThiJ
MMLKTVVSYALVLIGSAFMTFSTAGTAASTMTAKNRQMLVILTNHARYPSRTDSTGLWLTELTHFTDVVEAAGYSTVFASPKGGAVPLDERSLGWLYMDK AAREHLQSPAFRTRLQNTLPIADIDPSQFGVIYFTGGHGVMWDFPNNPDLRRVAETIYNQGDIVSAVCHGVAGLLDLKDEKGQLIIKGKNITGFSDREEL FSGMKSQVPFFLEDKLVSQGARYRKGWLPFTSFAITDGRLVTGQNPQSPKAVAEAVVAVLSGNNVAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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