Pseudomonas putida PD1, EX27_RS18375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCTTGCCCTGAACGCCGCTATCCAGGCCTCGCTGGCCGGTGAGGCCGGCCGCGGATTTGCCGTGGTTGCCGACGAGGTGCAGCGCCTGGCCGAGCGCTC ATCGTCTGCCACCCGCCAGATCGAGGCGCTGGTGCGTACCATCCAGGCCGATACCAACGAAGCGGTGATCTCCATGGAGCAGACCACCGCCGAAGTGGTG CGTGGCGCACGCCTGGCCCAGGATGCCGGGGTGGCGCTGGCCGAGATCGAAGGGGTATCGCAGAACCTCGCCGACCTTATCCACAGCATCTCCGACGCTG CCCAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACCGCCGA CAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGGTGTCCGGTTTCACCCTGCCACCACCGACCGAGCCGCGTTAAGGAATAGTGACC
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| DNA Sequence for Gene |
>EX27_RS18375
ATGGCTTCTGCAGTAAGCCCCGAGCGTCACGAAACAGTGGCGCTGGCCTGGACCAAGGCCGCCATCCTCGATTGCCTGGGCCAGGCACGGCAGGCGCTGG AGCGCTTTGCCGGCGAGACGGGTGACCTGTCGATGATGGCTTTTGTGGTCGACAACCTGCACCAGGTGCACGGCTGCCTGCGCATGCTCGAACTGCGCGG CGCCACGCGCCTGGCCGAGGAGCTGGAGCTGTTCGCCAAGGCATTGGCCGACGGCCAGGTCAGCCCCCGGGGTGATTGCCTGGGCGCATTGTTCCGCGGC CTGGAGCAGTTGCCCTCGTACCTGGAGCGGTTGCGCGGTGCCCGCCACGACCTGCCACTGGTCATGCTGCCGTTGCTCAACCAGCTGCGTGCCTGCCGTG GGGAGGAACCGCTGGCCCAGGCCAGCCTGATGACCGGTGCCGCCCAACGCTTTGCGGGTGACGATGACCTTGCCAACCTCGACCTGTCGCTGGGCAACTG GCGTGACCAGTTGCAGGCCGGGTCAGGGCGCGATGCGCTGCGTTCGGTGGTGACTGCACTGTGCGACGACTTGATGCGCATCAAGGAGCGCCTGGACCAG TACGGCCGCGGCGACCGTCAGCACAGCGAGCAGCTCGATGCGCTGCTGGCACCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAAC CGCGGCGGGTGATCATCGACCAGGTGTTGGCGTTGCAGGCATTGGCTCAGGGCGAGCGGGCGGTGGACGACGCGGTGTTGATGGACGTGGCGGGGGCCCT GCTGTACGTGGAGGCCTCCTTGAACGGCATGGTCGGCCCTTTGGAGGAAAGCGGCCAAGGCAGCCTGCCAGGCTCGGACCTGGCGGAGATACGCCAGCTG GTGCTGCATGAAGCGCTGAACGTGTTGCAGCAGGCCAAGGATCTGATCGGCGATTACCTGGAGTCCGACTGGCCCCGGCAACGCCTGCAACCCTTGCCGG GGCTGTTGCAGCAGATCCGCGGGGCACTGGCCATGTTGATGCTGCCCGCCGTGGCCGAGCTGTTTGTCGGCTGCGCAAGCTATGTGCAGCGTTGGTTGCA GCACCTGGAGGAAGAGCCGCCGGTTGATGAGCTGACGCACTTGGCTGAGGCGCTGAGCGCTGCCGAATGCTACCTGCAATGGCGGGCGGCCGACCCGCTG GCCGATGGCCAACCCTTTATCGAGATGGCGCGGGCCAGCTTGGCGGCGCTGGGTGTGCAGTGCGCGGTGGTTGGGGTCAGCGCAGACCTGGACGGCAGTG GCGACGGCATCGATGACGAGCTTCGCGAGGTGTTCCTTGATGAAGCGGGCGAGCTGCTGCCGGAAATCGAGCGCCACTGGCTGCGCTGGCGTGCCGACAA CCAGCAGCGCGAGGCGCTGGGCGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGTGGCCGCATGGTGCATGCCGAGGCGGTGGCTGAACTGGCCTGG GGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCACCCCGGAAGGGGTTGTAGCGCTGCAGCAGGTGTTCGTTCACCTGCCTGACT TGCTGGCCGACTTTGCCGCCGGCCAGTTGCCGCAACTGACTGAAATCGAGCAATTGGCCGGGCACCTGCACAGCCTGGCCGAAAACGATGCCCCGGCGGC TGCCGGTGTCGATGGCCTCGATCCGCAGTTGCTGGGCATTTTTCGTACCGAGGCGCAGGGCCATCTGGCCAGCCTTGAGGCTTATCTGCAAAGCGCCGGC GGCCACGACACGCCGGTCAGTGATGACTTGCAGCGTGCCTTGCACACGCTCAAAGGCAGTGCCGCCATGGCCGGTGTGATGCCTGTCGCCGAACTGGCCA CTGCCTTCGACCGCCTGGCCCGTGAATACAAGGGCCATCAACTGCCACTGCAAATGGCCGAGATGGAGTGGCTGGAAGCTGCGCGGTCATTGTTCCATCT GGGCTTGGCGCAACTCGATAGCACGCCCCTGGCCGCCATTCCCGGTGCCGCGGAACTGATCGAGCAGGTGGGCCAGGCCGTGGACGGCCGCCTGGCCAGT CTGCATGAAGACTCGCACCCTGCCGGCCGCAGCAAGCGTGATCCGCAGTTGGTCGCCAGCTTCCTGGCGCAGGCCATGGACATTCTGCTCGATGCAGAGA CGTTGTTGTCGCGCTGGCAGCAACAGCCCGCCCAGCGTGACGCACTGGATAACCTGCTCGACCAGATGACCACCCTGGGGCACGCTGCGCACCTGGCCGA CCTGTGGCAGATGGATGAGGTGTGCGAGGCGTTGCTGGACCTGTATGGCGCGGTGGAGGAGGGCAGCCTGCCTGCCGATTCCCGCTTCTTCAGCCAGGCC CAGCGGGCCCATGAGGCCTTGCTGGACATGCTGGACGAAGTGGCGGCCGGGCAGGATATTCCACCGCGCCCGGAGCTGGTCGACAGCCTGCGCAACCTGC TGGACCAGGCCCTGGCGCCGGATGCCACCGGCCTGGTGGGCATCGACACGGTCACACCGCTGCACCCGGACATGGACCTGGCCGATACCTTGGGGCTGCC ACACCCGCCGTTGCAGCCGCAGGTGGCAGAGCCGCTTGCCGAGGCGCCGGAAAGCCCCGGCGAAGAGCTGCTGGAAGTGTTCCTGGAAGAAAGCTCGGAC ATCGTCGAGAGCGCCGCAGCGGCCCTGGCGCGCTGGCAGGCCGACCCGCGCAGCAGCGTCGAGGTGGACAACCTGATGCGCGACCTGCACACCCTCAAAG GCGTGGCGCGCATGGTCGAAATCACCCCGATCGGCGACCTGGCCCACGAACTGGAGTTCCTCTACGAGCTGTTGGCTGCGGGTAGATTGCCGCCAAGCGC GCCACTGTTCGCACTGCTGCAGAACTGCCACGACCGGCTGGCGCATATGCTTGACGCTGTGCGCCTGGGGCAGCCGCTGCATGCCGCCACGGCGCTGATC GACTACATTCGCAACTTCAGCAGCGCCGCACTGACAGACACTGCCGCAGGCCAGGGGCCGCCAGAAGCTGCAACCGCCGAAGTTCCGGCAGCAGCACCAG AGCGGGCACCGGGTGACATGGTCAAGGTCGACGCCGAGCTGCTCGACGACCTGGGTAACCTGGCCGGCGAGCACTCGATCATCCGTGGGCGCATCGAGCA GCAGGTCAACGACGCGCAGTTCGCCCTCAACGAGATGGAAACCACACTCGAGCGCATGCGTGATCAGTTGCTGCGTCTGGATGTCGAGACCCAGGGGCGA ATCTCCAGCCGGCAGCAGTTCGAAGGCGATGCCTATGACGACTTTGACCCGCTGGAAATGGACCGCCACTCCCAGCTGCAGCAGCTGTCACGGGCCCTCT TCGAGTCTGCCTCGGACCTGCTGGACCTGAAGGAAACCCTGGCTCAGCGTGCTCAGGAGGCCTACAGCCTGCTGCAACAGCAGGCGCGGGTGAACAGCCA GTTGCAGGAGGGCCTGACTGCCACCCTGATGGTGCCGTTCGAGCGCCTGGTGCCGCGCTTGCAGCGCGTGGTGCGGCAGGTGGCCAGCGAGCTGGGCAAG CAGGTGGAACTGGTGGTTGGCAATGCCGAGGGCGAACTGGACCGCAGCGTGCTGGAACGTATGGTGGCGCCGCTGGAGCATATGCTGCGCAACGCCGTTG ACCACGGCCTGGAAAGCCGCGCAATGCGCCTGGCCGCCGGCAAGCCGGAGCAGGGTACCATTCACTTGAATTTGCTGCATGAGGGCGCCGATATCGTCAT CGAAATGACGGATGATGGTGCTGGCGTACCACTGGAAGCGGTGCGGCGCAAGGCCATCAAGCGCGGCCTGCTGGACCCGCAGGCGCAGTTGAGTGACCAC GAGATCCTGCAGTTCATACTGCGGCCAGGCTTTTCCACCGCCGAAAAGATTACACAGATTTCCGGGCGTGGGCTGGGCATGGATGTGGTGCACGAGGAGG TCAAGCAACTGGGTGGCTCGATGAGTATCGAGTCGGCGCAGGGCAAGGGGGCGCGTTTCCTGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCT GATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTCCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTG GACTCGCCGCGCTATGTCTATGCCGGCCACGAATACGAGCTGCGCTACCTGGGCGAGTTGCTGCAAGGCCTGCCGCGCCCGGCGCTGCTGGGGCAAAGTG TGCCGTTGCCGGTGCTGCTGGTGCATTCCAAGGAGCAGTCGTTCGCCATCCAGGCCGACAACCTGTCGCCCAGCCGTGAGATCGTGGTGAAAAGCCTGGG GCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTACTGATTCTTGACCTGCTGGGCCAGCTGCGCGGCCAG CAGCGACGGCTGGCCCGCCTGCCCGGAGGCGGTAGCCAACGCCAGTTGCTTGGCCCGGCACCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGG TAACCGTACGCAAGGTCACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTCACGGCCAAGGATGGCGTCGATGCCATGGCCCTGCTGGAAGAGCA CCGGCCCGACGTGTTGTTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATCCGCCGTGACGCACGGTTGAAAGACTTGCCG ATCATCATGATCACCTCGCGTACCGGGCAGAAGCACCGGGACCGCGCCATGGCCATCGGCGTCAACGAATACCTGGGCAAGCCGTACCAGGAGTCGCTGC TGTTGCAGAGCATCGCCCATTGGAGCCAGGCCCATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTGATTTCCGGCCAGCGCAGCAGCCTGACCGGGCTGTTGCTACCGTTGGGTGACCGCACGCTGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGG CAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATTGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGT GCGGTGGTGAGACGCCGTGCGGGGAGCGGGCTCGCGTGGTGGTGCTCAATGCTTTGGGCGATACCGGTTTGCGGTACCTGGCGCTGTTGCTGCAGGACAT TCCGCGCTCGTGCAAGCTCGACAGCCAGCTGAACTACGTGGATGTGGCGCTGGGCAGGTTGGAGCTGGCGGCGGTGCAGGTGGGTGAGCAGGTGGCGCGG GTACCGGACCTGGTCGCCTTGGAAAGGCTGGTGCGTGACGCGGATCTGCAACCTGATCTTGGTTAGGATGTGAGGCGCAGGGCCTCTTCGCGGGTAAACC
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| Amino Acid Sequence |
>chemotaxis protein CheA
MASAVSPERHETVALAWTKAAILDCLGQARQALERFAGETGDLSMMAFVVDNLHQVHGCLRMLELRGATRLAEELELFAKALADGQVSPRGDCLGALFRG LEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGEEPLAQASLMTGAAQRFAGDDDLANLDLSLGNWRDQLQAGSGRDALRSVVTALCDDLMRIKERLDQ YGRGDRQHSEQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVDDAVLMDVAGALLYVEASLNGMVGPLEESGQGSLPGSDLAEIRQL VLHEALNVLQQAKDLIGDYLESDWPRQRLQPLPGLLQQIRGALAMLMLPAVAELFVGCASYVQRWLQHLEEEPPVDELTHLAEALSAAECYLQWRAADPL ADGQPFIEMARASLAALGVQCAVVGVSADLDGSGDGIDDELREVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAELAW GAEHLLNRVLEGRSVLTPEGVVALQQVFVHLPDLLADFAAGQLPQLTEIEQLAGHLHSLAENDAPAAAGVDGLDPQLLGIFRTEAQGHLASLEAYLQSAG GHDTPVSDDLQRALHTLKGSAAMAGVMPVAELATAFDRLAREYKGHQLPLQMAEMEWLEAARSLFHLGLAQLDSTPLAAIPGAAELIEQVGQAVDGRLAS LHEDSHPAGRSKRDPQLVASFLAQAMDILLDAETLLSRWQQQPAQRDALDNLLDQMTTLGHAAHLADLWQMDEVCEALLDLYGAVEEGSLPADSRFFSQA QRAHEALLDMLDEVAAGQDIPPRPELVDSLRNLLDQALAPDATGLVGIDTVTPLHPDMDLADTLGLPHPPLQPQVAEPLAEAPESPGEELLEVFLEESSD IVESAAAALARWQADPRSSVEVDNLMRDLHTLKGVARMVEITPIGDLAHELEFLYELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAATALI DYIRNFSSAALTDTAAGQGPPEAATAEVPAAAPERAPGDMVKVDAELLDDLGNLAGEHSIIRGRIEQQVNDAQFALNEMETTLERMRDQLLRLDVETQGR ISSRQQFEGDAYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASELGK QVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESRAMRLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQAQLSDH EILQFILRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAELAACYQL DSPRYVYAGHEYELRYLGELLQGLPRPALLGQSVPLPVLLVHSKEQSFAIQADNLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQLRGQ QRRLARLPGGGSQRQLLGPAPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEVATRIRRDARLKDLP IIMITSRTGQKHRDRAMAIGVNEYLGKPYQESLLLQSIAHWSQAHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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