Pseudomonas putida PD1, EX27_RS03375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCACCGCACCCTCAAGGCGAGTCCCGGCTGCCGGCTGGCTGGCATCGGCTGTGCGCCCCATGATCAGGGCGCTGAGGGGGAACATGAAGATTTGTTCA TTGCGTAGTCATGGTGGTGAGTCAAGGGGGGGTTTTTGATGGTTTGTGGATCCATAATTCGATTGTGTTCGTTAATCGAACATCAAGTTTCTTTGGTTTT AAATTTATAACCTATTGAATTTAATTATAAAAAATATGATTTTTCCTAACGATGAGCTGAGGTTGGTCGCGCCTGATTGATAGGCAGTGCTTTCGTAACG TTGTCTGTGGATCCATTATCTGGTTGATTAGCGCCTGACAACGGCCGGAGCCCTCCTGCCGTATGCGATAACAATTACAAAAAGGGTCCAGTCATGAATG GCTATCCAGCGGCACTGAACCGTCAGGGTTCCTCCCGTTGCGCCTGCGCGTGCGCATCGTTCCTCTCGCCTGTGGCCAAGCCTGGCCGGCAGGTGACCCC
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| DNA Sequence for Gene |
>EX27_RS03375
ATGAATACCGATCTCAAGCAACGTCTGGACAACGACCCGATGGGTCGCTTTCAGTGCCTGGCCATTGGTATTTGCATCATCCTCAACATGATCGATGGCT TCGACGTGCTGGTCATGGCCTTCACCGCCGCCTCGGTGTCTGCCGAGTGGGGCCTGAATGGGGCGCAGGTAGGGCTTCTGCTCAGTGCCGGCTTGTTCGG TATGGCGGCCGGGTCATTGTTCATCGCGCCGTGGGCTGACCGCTTTGGCCGACGCCCGCTGATCCTGCTGTGCCTGGCGCTGTCCGGTATCGGCATGCTG CTCTCGGCACTGAGCCAGAGCCCGCTGCAACTGGCGCTGCTGCGTGGCCTGACCGGGCTGGGCATCGGTGGCATCCTGGCCAGCAGCAATGTGATTGCCA GTGAATATGCCAGCAAACGCTGGCGCGGCTTGGCGGTGAGCCTGCAGTCCACTGGCTATGCGCTGGGTGCGACCCTGGGCGGTTTGCTGGCGGTATGGCT GCTGGGGCATTGGGGCTGGCGCTCGGTATTTCTGTTTGGCGGCATCGTCACCGTACTGGTAATCCCGCTGGTACTGCTGTGGTTGCCAGAGTCGCTGGAC TTTCTGCTGGCACGCCGGCCGGCCAATGCGCTGGCCCGGGTCAACCGCCTGGCCGTACGCCTCGGCCAGCCGGCATTGGCGCAACTGCCGGCTGTTGCCG CACGGGCAGAAGGTGCCAGCAGGGGTTTCAAGCAGCTGCTGGCGCCGGCCATGCGCCGCACCACGCTGGTGATCTGGTTGCTGTTCTTCCTGGTCATGTT CGGCTTCTACTTCGTCATGAGCTGGACGCCGAAACTGTTGGTGGCCGCCGGCTTGTCGGCCCAGCAAGGCATCACCGGCGGGGTGCTGTTGAGCGTGGGC GGCATCCTTGGCGCGGCGCTGATCGGCGGCCTGGCTTCGCGCTGGCCACTGACGCGCGTGCTGGCGTTGTTCATGCTCATTACCGCCGCGCTGCTGGTGC TGTTCGTGGCCAATGGCGCCTCGGTCACTGCGGCGCTGGCGTTGGGCCTGCTGATCGGGCTGTTTTCCAACGGCTGCGTGGCTGGGCTGTATGCCTTGTC GCCGGTGGTCTATGACGCATCGGTACGCGCCACCGGCGTGGGTTGGGGGATCGGCATCGGCCGCATGGGCGCAATCCTGTCGCCGACCGTGGCTGGCGTG CTGCTCGATGGTGGCTGGCAACCCCTGCATCTGTATGGCGTGTTCGCCAGCGTGTTCGTGCTTGCCGCGGGTTGCCTGCTGCTGTTGCGCCCAACGGCCA AGCCTGCGTCTGCCTTGTCTGCTGATGCACTGAGCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGCAACCCGGCCTGGCCGGGTATCTGAATGCAACTTACTGCTCCGGGTCATGCTGGCCTGGGGCGGTCTGCTGCGCCTATTGAACGCGGAGAACAATAA TAATGATGGACACAACTTGTACGCTGGCCCGTTCGGTCCTGGCAGTTTCGCTGGCGTTTGGCCTTGGTTTGCCGGCCTGGGCGCAAGAGGGGGGCTTCTT TGAAGATGCCAAGGGTGGGCTGACACTGCGCAACTACTACTTCAACCGGGATTTCCGCGACCCGGGGGCCGCCAAGGGCAAGGTTGAAGAATGGGCCCAG GGTTTCATCTTCAAGTTCAGCTCGGGCTACACCCCGGGGCTGATCGGTTTTGGCCTGGATGGTATCGCCCTGTTCGGCGTGAAGCTGGACAGCGGCGGCG GTACCAGCGGCTCAGAACTGTTGCCGGTGCACGATGACGGGCGAGCGGCCGACGACTACGGTCGGGCCGGGCTGGCGGCGAAGCTGCGTATGTCTGCGAC
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| Amino Acid Sequence |
>MFS transporter
MNTDLKQRLDNDPMGRFQCLAIGICIILNMIDGFDVLVMAFTAASVSAEWGLNGAQVGLLLSAGLFGMAAGSLFIAPWADRFGRRPLILLCLALSGIGML LSALSQSPLQLALLRGLTGLGIGGILASSNVIASEYASKRWRGLAVSLQSTGYALGATLGGLLAVWLLGHWGWRSVFLFGGIVTVLVIPLVLLWLPESLD FLLARRPANALARVNRLAVRLGQPALAQLPAVAARAEGASRGFKQLLAPAMRRTTLVIWLLFFLVMFGFYFVMSWTPKLLVAAGLSAQQGITGGVLLSVG GILGAALIGGLASRWPLTRVLALFMLITAALLVLFVANGASVTAALALGLLIGLFSNGCVAGLYALSPVVYDASVRATGVGWGIGIGRMGAILSPTVAGV LLDGGWQPLHLYGVFASVFVLAAGCLLLLRPTAKPASALSADALSH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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