Pseudomonas putida PD1, EX27_RS03255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGTGTGCTGCACGGCGGCGCTGAAGAACATCGAGATCATCGAGCGCGAGCAACTGCTCGATCATGTCAACGACGTGGGGGGTTACCTTGAGCAACGCT TGCAGAGCCTGCGCGATCTGCCGCTGGTGGGGGATGTGCGCTGCATGAAGCTGATGGCCTGTGTCGAGTTCGTCGCCAACAAGGCCAGCAAGGCACTGTT CGCCGATGAGGTGAACATCGGCGAGCGCATCCACAGCAAGGCGCAGGAAAAAGGGTTGCTGGTGCGCCCGATCATGCACCTGAACGTGATGTCGCCACCG TTGATCATCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCCTCGAAACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAG GCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCCCCCGATACCCCGCTTACCCTCACA
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| DNA Sequence for Gene |
>EX27_RS03255
ATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCTGGCCCATGGCGAAACCCCCGAGGCGCTGGAGTATGTGGCCGCTGCCATCGGCCAGT TGGTGCAGGTGGAGTCGATGATGATCAGCCTTGAGTGCCAGGGGCGGGCACCGCAGTTGCTGTACCAGCAAGGCATTCCTGAACTGCACCGGGCTGCCGT GCTGGAGCGCTATTTCAGCGCCGGCTACCTGCTGGACCCTTTCTGCCTTGCCGTGCAAAGCGGCCTGGCCGAAGGCTTCTACCACCTGCAGGAAATCGCC CCCGACAACTTCTTCGACAGCGACTACTACAAGGCTTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACCTCAGCGCAGGCCGCA AGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAATGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCCGATGGTGCGCGAACTGCT GGGGCGCTATGCCCGGCACAACCTGGAACCGGGCGCTGCATCAACCGAGCGCGGCAGCCTGCAGGCAGCGTTCGACAGCTTTGGCTGCCAGGTGCTGACC GACCGCGAGCGCGAAGTGGCCCACATGATCTTGCGCGGGCACTCGGTGAAATCTACTGCGCAGGAGCTGGGTATCTCGCCGGAGACCGTGCGCATGCACC GCAAGAACCTGTACATGAAGCTCGGGATCAACTCGCAATCGGAGTTGTTTGCACGGTTTATCGACTGGTTACGCGGTGATCAGCTGGAAATCGATAGCGT AACGCGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAATACCCAGTGGCTGACGTACATGCCGTCGGGCGCTTCCCAAGGCGCACCGGCAGCGACTGCACAGCACCAACCCGCTCGAAGGACAACGGCATCTTC TTCGCTGCTCAGCCCTCGCGGAACAATGTCCGGCTGAGGGCCTTTCTTGGCTACTTGAAGTCACTCGTCGCCTGCCCTGGCTAGTGGCGCTATAGTGGCT AAGCTGAGCGTTCAGCACTCTGCTCAACTGAGCAATCTGGTGCGCAATTACAAGGACGAAGTCATGGACGCTGAAAGGGATAGCAGAAACATTACCGGTG TCATTCGGGCCTACGGCGGGAGCGCATTGTCGTTGTCTCCCGGTCAAAATGCCGGGGTACAAAGCCCGGGCATCTATGTGATCTATTTTGTTACGGACAG CAGGCAGGGCACTTGTCTCCCCTTCTACTGCGGGTTCACTTCGCGCTCAATCAGGCAAAGGCTTTATGAACACTCCCAGCCTGGCGGCCAGATCTACAAA
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| Amino Acid Sequence |
>LuxR family transcriptional regulator
MGALQQWHVALQRALAHGETPEALEYVAAAIGQLVQVESMMISLECQGRAPQLLYQQGIPELHRAAVLERYFSAGYLLDPFCLAVQSGLAEGFYHLQEIA PDNFFDSDYYKAYYLGTGCSEDSYYIVDLSAGRKLSLSLFQGCSGTRLNAGQVDLLRALEPMVRELLGRYARHNLEPGAASTERGSLQAAFDSFGCQVLT DREREVAHMILRGHSVKSTAQELGISPETVRMHRKNLYMKLGINSQSELFARFIDWLRGDQLEIDSVTR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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