Pseudomonas putida PD1, EX27_RS16230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCCTGGTGGCGGCGGCCAAGTCCGATGGGCATATCGACGAGCGCGAGCGGGCGTTGATCGAGGGCGAATTCACGCGCCTGGACAGCGACCGCGAATTG CAGCACTGGCTGCATGCCGAGCTGAACAAACCGCTGGACCCTGCCGAAGTGGCCCGTGCTGCGCAAACACCGGAGATGGCTGCCGAGATGTACCTGGCCA GCGTGATGATGGTCGATCAGGAAAACTTCATGGAGCGTGCCTACCTGGACGAGCTGGCACGTCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGCGCTGGA GGCTCAGGTGAGGGAGGCGGTTGCGCAGTAGCAGCGCTTGTCATGACATTTTCTGCGCTTGTCGAACCGAGCGCGGAAAATGTCACGGCAAGCCTTGCCA GCTTTTACCCAATCCGCGCATTTCGCCCGATAAACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAT
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| DNA Sequence for Gene |
>EX27_RS16230
GTGAAGAACTGGACCTTGCGCCAACGGATCCTGGCAAGTTTCGCCGTGATCATCGCCATCATGCTGCTGATGATTGTGGCCGCCTACTCGCGGTTGGTGG CTATCGAAACCGCCGAAGAGGCAGTGGGGACCGACAGCATTCCTGGCGTCTACTACAGCTCGATGATTCGCAGCGCCTGGGTCGACAGCTACGTCACCAG CCAGCAACTGGTGGGCCTGTCCAACCATCGTGAAATCACTTCGGCCGACCTGGAACTGTTCAGAAGCTTCGATAACCGGCTGAAGCAATACATGGCCAGC TACCAGGCCACCATCCAGGACAAAGACGACCAGGTCCGCTTCGACAGCTTCGTGCAACTGGAAGAAAGCTACCTCAAAATCGTCAACCAGGTGCTGGATG CGTACGGTCAGCGCAACTACGACGAGGCCCAGCGGCTGATCACCGAGGTCCTCACTCCGGCCTGGAAGGATGGGCGCGAGCACCTGAATGAAGTGATCGA GAATAATCGGGCCTCTGCCGATGCCGCCACCAACGATATCGTCAACGCAGTCAACACGGCCAAGGGCAGCATGGTGGTCTCACTGCTGCTGGCAATCGTC GCTGCCGGCATCTGCGGCCTGTTGCTGCTGCGCGCTATCACAGCGCCCATGCAGCGTATCGTGCATGCCCTCGACAAGCTGCGTTCCGGTGACCTGAGCA TGCGCCTGAGCCTGGATCGCAAGGACGAATTCGGTGCCATCGAAAGCGGCTTCAACGAAATGGCCGAGGCACTGGCCAACCTGGTGGCCCAGGCCCAACG CTCGTCGGTGCAGGTGACCACTTCGGTCACCGAAATTGCCGCCACGTCCAAGCAACAGCAGGCCACCGCCACCGAGACGGCCGCCACCACCACCGAAATT GGCGCCACCTCGCGGGAAATCGCCGCGACTTCGCGGGACCTGGTGCGCACCATGACCGAGGTGACGACGGCTGCTGACCAGGCATCCAGTCTGGCAGGCT CCGGGCAACAGGGCCTGGCACGCATGGAAGAGACCATGCACCAGGTGATGGGCGCTGCCGACCTGGTCAATGCCAAGCTCGGTATCCTCAACGAGAAAGC CAGCAACATCACCCAGATGGTGGTAACCATCGTCAAGGTTGCCGACCAGACCAATCTGCTGTCGCTCAACGCCGCCATCGAAGCGGAAAAGGCCGGTGAA TATGGCCGCGGCTTTGCCGTGGTCGCGACCGAAGTGCGCCGCCTGGCCGACCAGACCGCCGTGGCCACCTACGACATCGAGCAAATGGTGCGCGAGATCC AGTCAGCAGTGTCGGCCGGTGTCATGGGGATGGACAAGTTCTCCGAAGAAGTGCGCCGCGGCATGTTCGAGGTGCAACAGGTGGGCGAGCAACTCAGCCA GATCATTCACCAGGTGCAGGCCTTGGCGCCGCGCGTATTGATGGTCAACGAAGGCATGCAGGCCCAGGCCACCGGTGCCGAGCAGATCAACCAGGCACTG GCCCAGCTCAGCGATGCCAGCACCCAGACTGTCGAGTCGCTGCGCCAGGCCAGCTATGCCATCGATGAGCTGAGCCAGGTGGCCGCGGGCCTGCGTGGCG GCGTGTCGCGCTTCAAAGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGATGAACGACTTGCAACTGCGCACCGCGCGGGCGGCGAACACCGAGGGGGCGTTGTACCTGCAGTTTCGCATCAGAACGCAGCGTTTTGCCCTGAG CGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAGCCGATCGCCCAGGCACCTGCCTGGGTCGCGGGCATCCTCGCCCATCGTGGCCAGTTG GTTCCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTACTGGTGCACTACCGAGGCGGCCTGCAGC TTGGCCTGATCCTGGAGCAGGCCACCGAAACCCTGCGTTGCCAACCGGACGAGTTCCAGCCCTATGGGGTGGACACCGGTGAAGCGCCTTATCTGGGCCC GGTGCGCCAGGATGCCCAGGGGCTGCTGCAGCGCATCGAAGTCAATGACCTGCTGCCCGACACCGTGCACGCATTGCTGTACACGCAAGACCCGACAGGG
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| Amino Acid Sequence |
>chemotaxis protein
MKNWTLRQRILASFAVIIAIMLLMIVAAYSRLVAIETAEEAVGTDSIPGVYYSSMIRSAWVDSYVTSQQLVGLSNHREITSADLELFRSFDNRLKQYMAS YQATIQDKDDQVRFDSFVQLEESYLKIVNQVLDAYGQRNYDEAQRLITEVLTPAWKDGREHLNEVIENNRASADAATNDIVNAVNTAKGSMVVSLLLAIV AAGICGLLLLRAITAPMQRIVHALDKLRSGDLSMRLSLDRKDEFGAIESGFNEMAEALANLVAQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEI GATSREIAATSRDLVRTMTEVTTAADQASSLAGSGQQGLARMEETMHQVMGAADLVNAKLGILNEKASNITQMVVTIVKVADQTNLLSLNAAIEAEKAGE YGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMFEVQQVGEQLSQIIHQVQALAPRVLMVNEGMQAQATGAEQINQAL AQLSDASTQTVESLRQASYAIDELSQVAAGLRGGVSRFKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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