Pseudomonas putida PD1, EX27_RS16020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain PD1 EX27DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCTGCGCCCGGACTTTCGCAAATACCGCGCCAACCTGCTGCACCTGCGTCAGGGCCCGGCACCCAACCCTTGGCGCTGGCAGAGCGAGCTGGCCCTGCA GTACAGCCGCGACCTGTTGCCTGCCGTCGAACAACTGCTGGTCAGCGACGATTCGGCTGTCCGCGGCTTTCGTCTGCACACTTACTCCGGTGCCAGCAGC GCCGTCTGGCGCAATACGTTCAGCCAAGCGCTGCCACTGACCTGGGCCCACCCCTTCGAGATACGCCCCTACATCGGCCTGGACCAGGGCTGGGTTCGCA CCGCCGAAGGCAAACCGTCACAGCGCCTGGCCGGGGCCGCCGCAGGGTTGGAGCTGAGCCTGCCCGGCAGCCGCCTGCGCCTGGACTACCAACGCGCCTT GTACACCAGTGACCTGCCCCGCCCGCTGCTGGAGCCCGGCTTCTGGGTGCTGGACTGGACCCTGAACATCTGATTCACCCACAACAAAGAGAACGAGAAA
DNA Sequence for Gene
>EX27_RS16020
ATGCAAACACTCTCGCAGTTACCGCCTGTTCGCCCGGATACCTTGCGCTGGGCAATCTTCCTCGCCGTGCTCGGGCCCAGCGCCGCACTGGCTCAGACAG GACTGGAAGCAGCCAGCGGCCCCGGGGGGACCCCGGTCATCCACAATGGCCACGGGGTGCCGGTGATCGACATCGTGCCGCCCAACGCCAAGGGGCTGTC ACACAACCAGTTCATCGACTACAACGTGGCCACCCCTGGCCTGGTGCTGAACAACGCCACCGCAGCCGGGCAGTCGCAACTGGCCGGTGCCCTGGCGGCC AACCCGCAGTTCCAGGGCCAGGCCGCCTCGACCATTCTTAACGAAGTGGTCAGCCGCAACGCCTCGCTGATCGAGGGGCCGCAGGAAATCTTCGGGCGCC CGGCCGACTACATACTGGCCAACCCCAATGGCATCACCCTCAATGGCGGCAGTTTCATCAACACCACCCGCGCAGGCTTCGTGGTGGGCACCCCGCAATT CGAGGAGCAACAGCTCAGGTACCTCGATACGCTCACGGCCAGTGGCACCCTGCAGGTACTGGAGCATGGCCAGGGCAATGCCGGTGGCGCACTCGAACTG ATCGCACCACGCGTGGACAGCAAAGGCCTGCTCATGGCCAGCGAAACGCTCGACATCACCGTCGGTCGCAACCGTATCGACAGCCGCAGCGGCGAGGTGG TCGAACACCTGCCCAGCCCCTCGTCGAGCATTGATGCCAGCCTGTTCGGCGCCATGCGCGCCGGGCGTATCCGTGTGGTAAGTACCGCCGAAGGCGCGGG TGTGCGTGTGGGGGCCTCGCAGATTCTGGGCGCCGAGGGGGTCGACATCAGCTCGGCCGGGGGCCTGCATGTCAGTGGCAGTGCCGACCGCCCGACCGAG CTGCGCAGCGAGCGCGGCGTGCTGAAACTCACCGCTGCCGATGACCTGATGCTTGAAACGGTCGACGGCCAGGCCCCGCGAATCGAAGCAAGGGCGGGCA AGAAACTCACACTGGACGCCAAGACAATCGAGCACATCAAGCACGACAGTGACAGCTGGAACAAGAAGTTCTGGTTCGTCACCCGCGAAACCTACAACAG CAAAACCACCACCACCCACCAGCAGCAACAGGGCAGTCAATTGCTGGGCACTGACAGCGTGCTGTTGCAGTCCGGCGACGACATGCGCATGACCGCAGCG AAGGTGGACGCCGGTAGCGAGCTGACGGTCGACAGCGGTGCCGGCCTGGACATCCTCGCCGGCATCGACAGCAAACGCACCGAACAGCAGGTGCGTCATC GCAAGGATTTATGGCGCGGTGACAGCGATAGCGACCAGCTCAAGGAAACCGCAAAGGGCAGTACCCTGAGCGCCGGGCACATGTCGATAAAGGCAAGCGA CAACCTCAACGTGCAGGGCAGCAGCCTGCACAGCCGCGGCGATCTGGCTATCCAGGCAAAACAGGCCGACATCGGTACCACCACCTTGCAGGAACACGGT ACCCAACGCGATTACCGAGGCGACCTGGTATCCGGTACATTCTTTGGCGATCGAAAAGGTAACGACACCGAGGGCCAGGTCGTCGCGGGCAGCACCATAA CCAGCGATGGCGAGCTCACAGTCAGAGCCGACCAGGTCGCCATCAAAGGCAGTACCGTGTTCGGTAAAAAGGACGCGGTGCTCTACAGCGAGAACGGTTC GCTGGCCATCGCGGCGGACCATGGCAGCACGACCTCCACCCAGCGCACCAGTGACAGTAAGCTGTTCGGCCTGATCGGCAGCACGCACGAAAGCACGGAC CGCAAACAGCAGGTACTGGTCAGCGACGTCAGCTCGACCAGCAACCTGCGCCTGGCCAGCGCCGAAGAGATGCGCATCCAGGGCGCCAAGGTCGAAGCGG GCAAGCATCTTCAAGTCGAAGCCAAAGGCGACCTGCTGATTGGCAGTGCGCAATCGGTCGATGAACGCGAAACCCGCGACCAACAACGGGGTTTCACGGC CAGCGCCAGACAGACCCAGGAAGCCGAGGATGGCAAGCCCGAGTCTCGCCAATACGCGGCTGGCGTGGCGTATGAGGTCGTGACCACCACCAGCAAGCAG CGCGCGACCAGCCAGGTTGCCAGTGAGCTCAAGGGTGCCTCGGTGGGCATGAGCAGCAGCGCGCACCTGCAGGTCAACGGCAGCAAGGTCCAGGCCACTG CCGGCGACCTCGATGTGCAGGCGCGGGAAGTGACACTGGGGGCGACCCGCAACGACCGTGACGTAGTCACCAGCACCACCGAAAGTGGTGGCGGGCTGAC GGTAACCGGTGGCATCGACCGCCTGGGCAGTTTGTTCGAAGGCCATCACAACCGCGAGGTGCAAGCCGAACGCGAAAGCAAGGTGCAGCGCAGCGAGTTG CAGGCCAGCGGCGATCTGAAATTGCGCAGTGATGCACTGCTCACCGAGGCCGTGCACGTCGAGGCCGGCAACACCCTGCAGGTGACCGCCGAACGCATCG ACAACCGTGCAGTGCAGGATACCCATGAACATGAACAAAGCCGTGACGACTGGTCGGGTAGCCTGGGCGCCAGTATCGAATACCGCGACCTGACCCGCCC TATCGAACGCCTGGTGCTGGGTGAGGAAGCCGCGCGCTTCCAGCAAGCCTCGCCCGAAGACGCCATGGCACCGCCCAGCGTGGGTGCCGACATGACGGTT GAACACCTCAAGCGCCTGGAAAACCAGCGCCGTGGCATTGCTCAGGTCAGCGAGTTGTCCGCAGCAAAGGTCGAGGTCAAGGCTGACACACTGGCCGACC AAGGCACAGCCTGGCGGGCCAATGCCGGCTCGCTGAAAATCGAGGCGCAGCAGCACCAGGTGAGCGCCGCCGAAAATACCCAGAAAACCACCGTTCAACG CCTGGCCTATGGTGGCGACGCGCGCCTGGACACCAGCACCGGCGAGGACTTGAATGTACGCGCCGCCGGCAAAGGAGGGTCGCTGAATAAAAAGGATATC GCCAGCACCGCCGTGCCCGGCAGCCTTTACGGGCAACAGGGTATCCAGGTACAGCTGGGCAGCGATGGCCGCTACGAAGGGGCCCGCATCGATGGCGGTG AAGGCAGCGTGGTCATGCACAGTGCAGGGTCGTTGGCCCTACCCCAGGCGACCGACCAGGCCGAACAGCAGTCACGCCAGCTCGATGGCAATGCCTGGGC CAAAGTCGGCAACCGCCCGGGCAGCACCGGTGTCGATGGCCGGGGCTATCTGGACCATGGCCAGAAGCTGAGCACGCAGAGCAAGGCACAAGTGGCACAA ATCGACGCCAAGGGCGAAGTTCAACTGACCAGCACAGGCGACCTGTTGCTCGAAGGCACCCGCATTGGCAACCGCGAGGCCAAGGCCGGCGACATACGGG TGCAAAGCGGCGGCCAGTTGCAGGTCAAGGCGGCCAGCAACACCCAGCAGGCCACAGGCGCCAACCTGGGTGGCGGCATGGAGCTGGCGGCCAAGGCTGG CCAGACCCAGGGGGGAGCCATAGGCGGCCACTTCAGCCACGGCAAGCAGGACGAACATGCACGTCAGGCGGTCGATGCCCAGTTTGCCAGCAACGGCACA CTGACCCTGACCAGCAGCGCCCGCGAGGACATCGCCCTGCACCTGCAAGGCCTGCAGGCCTCGGCCGAACAGATCACCCTCGACGCCTCGAATGGCGGCA TGCTGCTTGAAGCCTCTTCCAGCCAGGAGCGACGCGACAACCTCGACATCTCGGCCGGCGCCGGTTTCAACATGGCCAAGGGCGCGTTGGACACCCGCGG CCTGCATGGCCGGCTCAAGGTAGAGCTCGACAAGCGCGACAACCTCACCTGGAATACCAGTAACCTGCGCGCCGAGCGCATCGACCTGCAAAGCCGCGGC GATACCCGCATCGAGAGTGCCACCCTGGATGCAAAGCATATTGGCGGCACAATCGACGGTGACCTGCGCATCGCCAGCCTCAAGGACAACGTCAACACCC TGAGCGTGAAGGGCGATGTCAGGCTGAGCCAGGAGAAAAACCCGCAGGGCTATGTCAACGCGGCCAAATCGGTGGCAGGGCCGCTGGGAGGCAAGGTCGA GAAAACGGCAGGTTCTGCCCTGAGCAAGGCAGACCCAGGGTTCTCGCCGACCGTCAGCCTCGACGTGTCGCATGCACAGCGCGACAACGTGGCGCGTCAG ACCACGCTTAAAAGCAGCGACGGCATCGACCTGCAGGTCGGTGGCAACGCTCATCTGGTAGGGGCACGCTTGCAGTCGGCCAAAGGCGACGTGAGGCTCG ACGCCAACTCGGTCACCCAGGAAACGCTAAGCGGCAATGACTATCGCCGAGACCTGTCGCTTGATGCGTCCAACTCACCGGTGGATCTGGGCACGGCAAT CGCCGAGATAGCCAAAAGCAAAATGGCGGCGGATGGGGAAAATGCGCTGGACCTGGGTGTGTTGAGAACCAGTGGGCATAGTCGCAGCGAGCAATGGGCT TCGAGCATGCAAGGGAAGAAGCACTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GACGCAATCGCGGCCCTGGCAATTTGGGGGCATCAGAAATCTTGTGCCCTGCTGCTGATACCCAGGCACCGCGTGTCCCCCGCTTCCACAGCGAATACCA CAGCCCCCTGGGCGTGTGATTGCTCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTCAAGCCAACCTGTGCAGCCCCCGCCACCGATCCAGC CCAAGCAACACCAGCCCTATCCCCCAGAAACCCGCCAGCACCCCAAGGGCGTTGAGCATCACCTGCCCATACCCCAGACTGGCCACATCAATGAACGGAT AGGCATACACGCCAATCTCGCTCCCCCGCCACAACGCATAACCAAAGTAGACCGCCGGGTACACCGCCCACACCAGCAAATGCCATAGCCGCAACCTGCC CTTGGGCACCTCGCACCACCAGTACAGGGCATACAGCACCGGCATCACGTCGTGCAGCAACTCGTCCGCCAGCCATTGCCAACCCTGTGGTTGCCACAAA
Amino Acid Sequence
>filamentous hemagglutinin
MQTLSQLPPVRPDTLRWAIFLAVLGPSAALAQTGLEAASGPGGTPVIHNGHGVPVIDIVPPNAKGLSHNQFIDYNVATPGLVLNNATAAGQSQLAGALAA NPQFQGQAASTILNEVVSRNASLIEGPQEIFGRPADYILANPNGITLNGGSFINTTRAGFVVGTPQFEEQQLRYLDTLTASGTLQVLEHGQGNAGGALEL IAPRVDSKGLLMASETLDITVGRNRIDSRSGEVVEHLPSPSSSIDASLFGAMRAGRIRVVSTAEGAGVRVGASQILGAEGVDISSAGGLHVSGSADRPTE LRSERGVLKLTAADDLMLETVDGQAPRIEARAGKKLTLDAKTIEHIKHDSDSWNKKFWFVTRETYNSKTTTTHQQQQGSQLLGTDSVLLQSGDDMRMTAA KVDAGSELTVDSGAGLDILAGIDSKRTEQQVRHRKDLWRGDSDSDQLKETAKGSTLSAGHMSIKASDNLNVQGSSLHSRGDLAIQAKQADIGTTTLQEHG TQRDYRGDLVSGTFFGDRKGNDTEGQVVAGSTITSDGELTVRADQVAIKGSTVFGKKDAVLYSENGSLAIAADHGSTTSTQRTSDSKLFGLIGSTHESTD RKQQVLVSDVSSTSNLRLASAEEMRIQGAKVEAGKHLQVEAKGDLLIGSAQSVDERETRDQQRGFTASARQTQEAEDGKPESRQYAAGVAYEVVTTTSKQ RATSQVASELKGASVGMSSSAHLQVNGSKVQATAGDLDVQAREVTLGATRNDRDVVTSTTESGGGLTVTGGIDRLGSLFEGHHNREVQAERESKVQRSEL QASGDLKLRSDALLTEAVHVEAGNTLQVTAERIDNRAVQDTHEHEQSRDDWSGSLGASIEYRDLTRPIERLVLGEEAARFQQASPEDAMAPPSVGADMTV EHLKRLENQRRGIAQVSELSAAKVEVKADTLADQGTAWRANAGSLKIEAQQHQVSAAENTQKTTVQRLAYGGDARLDTSTGEDLNVRAAGKGGSLNKKDI ASTAVPGSLYGQQGIQVQLGSDGRYEGARIDGGEGSVVMHSAGSLALPQATDQAEQQSRQLDGNAWAKVGNRPGSTGVDGRGYLDHGQKLSTQSKAQVAQ IDAKGEVQLTSTGDLLLEGTRIGNREAKAGDIRVQSGGQLQVKAASNTQQATGANLGGGMELAAKAGQTQGGAIGGHFSHGKQDEHARQAVDAQFASNGT LTLTSSAREDIALHLQGLQASAEQITLDASNGGMLLEASSSQERRDNLDISAGAGFNMAKGALDTRGLHGRLKVELDKRDNLTWNTSNLRAERIDLQSRG DTRIESATLDAKHIGGTIDGDLRIASLKDNVNTLSVKGDVRLSQEKNPQGYVNAAKSVAGPLGGKVEKTAGSALSKADPGFSPTVSLDVSHAQRDNVARQ TTLKSSDGIDLQVGGNAHLVGARLQSAKGDVRLDANSVTQETLSGNDYRRDLSLDASNSPVDLGTAIAEIAKSKMAADGENALDLGVLRTSGHSRSEQWA SSMQGKKH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site