Pseudomonas putida PD1, EX27_RS16005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAATCAGGCTGGCCTGTTCCTGCCAACGCGCCAGCAGTACCAGGTTCACCTGCACGGCCAGGCCGAACCAGCCAAGCACAGCCATGCCAGTCAGCCAAG GGCGACGCGACATGTCAGGCCTGACGCTGCAGCTTCACGTACAGCTGCTCGACCTTTTCCCGCGCCCATGGCGTTTTGCGCAGAAAAGTCAGGCTCGACT TGATGGTCGGGTTGCTCTTGAAACAGCGCACGTCTATGCGCTCGGCCAGGCCCTGCCATTGGTAGTGCGCCACCAGCTCGGTGAGGATCTGTTCAAGGGT CTTGCCGTGCAGCGCGTTGTGTTGGGCCGTGCTCATGCTGTGCTCCGTAGGAAAGATGCGCACCTTACACGAGTGTAGTGGTGGGAGGGATCCGTCAAGT CGACAGAAAAATCGCTGGTCAGAGGCAAAACCTCTGTGATGGAATAGTTATGTTATGTTGTAACACTATAAAAGCCTCTGCCAAGGAACGCCCCATCCCC
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| DNA Sequence for Gene |
>EX27_RS16005
ATGCTGTACACACCGCTTCGCCTCTCCCCCCTTGCCGTCGCACTCTGGCTGGCTGCATCCCCCAGCCAGGCCGTAGAACTTGAGCCACAGGTCATCACCG CCAACCCGCTGGGCAACCGCCAACTGGCGGCTCCCAGCACCGTGCTCGAAGGCGACAACCTGCTGCAACAGCAGCACGGCAGCCTCGGTGAAACCCTGAA CAAGCAGCCCGGTGTCGCCTCTACCTGGTTCGGCCCTGGCGCCAGCCGACCGGTCATTCGCGGCCTGGACGGCGACCGCATCCGCATTCTGCGCAACGGC GTCGGCGCCCTGGATGCCTCGTCGCTGTCCTATGACCACGCCGTGCCCCTGGACCCGGTGACGGTCGACCGCGTCGAAATCGTCCGCGGCCCGGCCGCCT TGCTGTATGGCGGTAACGCCATCGGCGGCGTGGTCAACACCTTCGACAACCGCATCCCGGACTCGCCGATAGAGGGCATCCACGGTGCCGGTGAACTGCG TTACGGCGGCGCGGACACCACCCGCAGCAGCGCCGGCAAGCTGGAGGCCGGCGACGGCGCCTTCGCCCTGCACCTGGACGCCAACAGCCGCCAGTTCAAC GACCTGCGCATCCCGGGCTACGCACGCAGCGCCAAGGTGCGCGATGCCGACGAGCCCGGCAGCAAACACCGCCTGGAAAACAGCGACGGTCGCCAGGACG GCGGCGCAATCGGTGGTGCCTACCACTGGGACCACGGCTACGCCGGCCTGTCGTACAGCCGCTACGACAGCAACTACGGCTCGGTGGCCGAGTCCGGCGT GCGCCTGGACATGAAACAGGATCACTACGCCTTCGCCTCCGAACTGCGCGACCTCGACGGCCCTTTCAGCTCGGTCAAGGTAGATGCCGGCTACACCGAC TACGAACACAGCGAAATCGAGGAAGGCGAGGTCCATACCACCTTCAAGAACAAGGGCTACGAAGCCCGCATCGAAGCCCGTCACCAGCCGCTCGGGCCGA TTGAAGGGGTGATCGGTGCCCAGGTCAGCCGCAACGAATTCTCCGCCCTGGGCGAGGAAGCCTTCGTCCCGCACACCGATACCGACAGCCTGGCGCTGTT CATGCTGGAGCAGTGGCAAGCCACCGAACGCCTGAACCTGAGCCTGGGCGCGCGCATGGAACACACCCGCGTAGACCCAGACGCCAAAGGCAACGAGAAC TTCGTCGACGCCGACAGCGCCAGCAGCTTCAACGCCTTCAGCCTGTCGTCGGGGGCCGTGTACCAACTCGACCCCATCTGGTCGCTGGCCGCCAACCTCG GCTACACCGAGCGCGCCCCTACCTTTTACGAGCTGTACGCCAATGGCGCGCACGTAGCCACCGGCGCGTTTGAAGTTGGTGACGCCAGCCTGAACAAGGA AAAGGCGATTTCCGCCGACCTGGCGCTGCGCTTCGACAACGGCACCCACAAAGGCAGTGTTGGGGTGTTCTACAGCCACTTTCGCAACTACATCGGCCTG ATCGGCACCGGCAACCTGCGTGAGGGCGGGCATGATCACGACCATGACGAGGATGACCACGACCACGATCATGACGACGGCTTCCCGGAATACCAGTACC AAGGCGTGCGGGCGCGCTTCTACGGCATCGAGGCCCAGGACCGCTGGCAACTGGTCGAGAACCGTTACGGCAGCTTTGCGCTGGAGTTGTCCGGTGACTA CACCCGGGCCAAGAACCTGGACAGCGGCGAGCCACTGCCCCGCATCGCCCCGCTGCGCCTGAACAGCGGCCTGGTCTGGGAACTGGACCGCTGGCAGGCG CGAGTAGACGTGCAGCACGCTGCGTCGCAGCACCGCAAACCCGCCAACGAAACCGGCACCGATGGCTACACCACCTTGGGGGCGAGCGTTGGCTACCGCT TCGACATTGGCCAGAGCCAGTGGCTGGCGTTTGTACGCGGCGAAAACCTCACCGACCAGACCATGCGCTACGCCAGTTCGATCCTGCGCGATATCGCACC GGCGCCGGGGCGCAGTGTGGAAGTCGGGTTGCGTACCACCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCACAAGCGACGAAGATCGGTGTAGGAACGGGTTCACCCGCGAGGACGATGGTAGGTCAACCGGCGCATTCGCGGGTGAACCCGCTCCTACACCTGCCT CGATTAATGACGACTGTTGCCCGTTCAACAACAATCCTCTGCGACAATTTGTCTTTTTTTCTTACAACTTCCCCTATATCCTCCCCGCCGCAAGCTGAAA CGCTTCATCGAACAACCTTGTCGCCATATCCATTGAGGGGCTCGCCCTTCGATGCGCTTGCCGTTTTTTCAATAATCAAAAGATAGCGCTATCTCATGTT CCAACTGCCTAAAACCTGTTACATCGGCCTCGCCCTCAGTGCCTTGGCAACCCCCGCCAGCGCCAGCGAAATGTTCGCCAGCGACTCCCCGTGGATGCTC GGCGACTGGGGTGGAACCCGCAGCGAACTGCTGGAAAAGGGCTACGACTTTACCCTTGGCTACACCGGCGAGATGGGCAGCAACCTGCACGGCGGCTACG
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| Amino Acid Sequence |
>TonB-dependent receptor
MLYTPLRLSPLAVALWLAASPSQAVELEPQVITANPLGNRQLAAPSTVLEGDNLLQQQHGSLGETLNKQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPVTVDRVEIVRGPAALLYGGNAIGGVVNTFDNRIPDSPIEGIHGAGELRYGGADTTRSSAGKLEAGDGAFALHLDANSRQFN DLRIPGYARSAKVRDADEPGSKHRLENSDGRQDGGAIGGAYHWDHGYAGLSYSRYDSNYGSVAESGVRLDMKQDHYAFASELRDLDGPFSSVKVDAGYTD YEHSEIEEGEVHTTFKNKGYEARIEARHQPLGPIEGVIGAQVSRNEFSALGEEAFVPHTDTDSLALFMLEQWQATERLNLSLGARMEHTRVDPDAKGNEN FVDADSASSFNAFSLSSGAVYQLDPIWSLAANLGYTERAPTFYELYANGAHVATGAFEVGDASLNKEKAISADLALRFDNGTHKGSVGVFYSHFRNYIGL IGTGNLREGGHDHDHDEDDHDHDHDDGFPEYQYQGVRARFYGIEAQDRWQLVENRYGSFALELSGDYTRAKNLDSGEPLPRIAPLRLNSGLVWELDRWQA RVDVQHAASQHRKPANETGTDGYTTLGASVGYRFDIGQSQWLAFVRGENLTDQTMRYASSILRDIAPAPGRSVEVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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