Pseudomonas putida PD1, EX27_RS01255 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	418	514	1.1E-22
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	5	160	2.7E-74
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	248	829	9.3E-105
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	29	-
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	217	400	2.89483E-83
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	219	520	4.6E-112
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	190	212	-
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	217	399	2.0E-27
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	241	356	5.6E-45
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	402	520	3.03E-28
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	228	816	0.0
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	553	833	5.7E-95
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	209	400	1.77E-44
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	402	519	4.18476E-52
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	23	-
Gene3D	G3DSA:3.30.1490.70	-	-	-	230	397	5.6E-45
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	401	522	6.8E-36
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	563	787	1.76332E-112
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	547	788	9.0E-87
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	38	141	1.4E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.