Pseudomonas putida PD1, EX27_RS14660 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATCGGCACGCAAGATGAACATCACATACTTGAATGACACCACCCACAACAACGACCAAAGGATCAGCGACAGGATCCCCAGCACGCCATCATGGTTGAC CGACACCCCGTAGCCGCCGGTAAAGACTTCCTTGAGGGTATACAACGGGCTGGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACGAGCAGGCCC ACCGACCGTGACGCACCCTGCTTCCCCTCGTGCCCGCCCTCAGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCAAACGGCCTTCACGGCCCTTGG TAATCAATCTGCCACCAGGCCCTGGAAGGTACCCCGGCGCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTCAAGCGCCCTTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAAAAGCGCCCGTCAAGTTCGCCCCCGATTCCGGCCGGGCGACCTGTATTCAATACCGAGGTTAGTC
|
|
| DNA Sequence for Gene |
>EX27_RS14660
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGACTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTACCCACCTACGAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAATCGCTGGAAGTGAT CGGCGAAGCCATCAAGGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTCGAAGAAGGCAGCATCCGTGACGTGCACCCAAGCGTGCTGTCGGTC ACTGGCCCGCAGCAGTACGAGCAGGTAGTCAACGCCGTTCACGAAGTGGTGCCGCCGCGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCACAGG GCGTCAAGCTGACCCCGCGCCACTATGCCTACCTGAAGATCTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGTGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTGAAGGAAATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTGAAGACCCGCATGCTCGAGCTGTGCGAAGCACTGAGCAGCCTGGGCGCCTGGG TCCGCCTGCACTATGTGTACCCTTACCCGAACGTTGACGACGTGATCCCGCTGATGGCTGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGCGAGCAGTGCCCTGAGCTGGTG ATCCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTCGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTGGAAGGCGCCCCGGCCAACGACCTGGGCCTGGCCGAAGTACCGGACGACGTCAAGCAAGAGCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGTGCTGCCCGCCTGCAATTGCGCATCGGCAAGGAAATCGACGTGCTGATCGACGAAGTCGAGGAACAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCACCGGAAATCGATGGCAGCGTGTTCATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCG ACGAGTACGACATGTGGGCTGAACCCATCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGC CCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCTGGTTGAGCTTGTGGGTGAGGAACAGGGTAAGCTCCTT GATCTGCGCCCCGGTCGAGACCACTTTCTGCCGCCAATCGTAGGAGGCGCCGGCCGAAGTACCGACCGCCACCGGCAGGGCAAAGCCGAGACTGGCAAAT ACCGGGTCATCGAAGTCGCTATCGGGCGGGTCACCGAACTTCTTCCAACCCAGCGTCGCGAAACCGGTGACCGGGCCAAAGCCCTTGGCTATGTCGACCT GGGTGGTGTAATCGTACTGGCCGGTGCCCAGGCACTGGTCTTCATCAGCGGTAGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCGCCGTCACG
|
|
| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|