Pseudomonas putida PD1, EX27_RS13000

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003911	DNA ligase (NAD+) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00532	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03119	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03119	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	522	541	140.0
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	317	398	6.85E-29
Hamap	MF_01588	DNA ligase [ligA].	IPR001679	NAD-dependent DNA ligase	1	769	52.815727
PIRSF	PIRSF001604	LigA	IPR001679	NAD-dependent DNA ligase	1	612	0.0
CDD	cd17748	BRCT_DNA_ligase_like	-	-	698	765	4.51296E-24
PIRSF	PIRSF001604	LigA	IPR001679	NAD-dependent DNA ligase	602	774	9.7E-33
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	490	509	360.0
FunFam	G3DSA:2.40.50.140:FF:000012	DNA ligase	-	-	315	388	5.9E-35
Gene3D	G3DSA:1.10.150.20	-	-	-	515	595	3.0E-24
Pfam	PF03119	NAD-dependent DNA ligase C4 zinc finger domain	IPR004149	Zinc-finger, NAD-dependent DNA ligase C4-type	405	444	3.5E-10
FunFam	G3DSA:1.10.150.20:FF:000006	DNA ligase	-	-	516	593	1.7E-23
SMART	SM00532	ligaN3	IPR013840	NAD-dependent DNA ligase, N-terminal	2	458	0.0
Pfam	PF12826	Helix-hairpin-helix motif	IPR041663	DisA/LigA, helix-hairpin-helix motif	520	583	3.2E-19
FunFam	G3DSA:1.10.287.610:FF:000002	DNA ligase	-	-	1	63	2.3E-28
Gene3D	G3DSA:1.10.150.20	-	-	-	608	685	3.9E-7
Gene3D	G3DSA:6.20.10.30	-	-	-	389	439	1.3E-13
Gene3D	G3DSA:1.10.287.610	Helix hairpin bin	-	-	1	64	4.5E-28
Gene3D	G3DSA:3.40.50.10190	BRCT domain	IPR036420	BRCT domain superfamily	686	771	5.1E-24
Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	IPR001357	BRCT domain	695	763	1.6E-10
FunFam	G3DSA:1.10.150.20:FF:000007	DNA ligase	-	-	440	515	6.7E-29
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	2	314	4.68E-120
SUPERFAMILY	SSF47781	RuvA domain 2-like	IPR010994	RuvA domain 2-like	601	686	3.04E-9
NCBIfam	TIGR00575	JCVI: DNA ligase (NAD(+)) LigA	IPR001679	NAD-dependent DNA ligase	10	604	0.0
SUPERFAMILY	SSF52113	BRCT domain	IPR036420	BRCT domain superfamily	696	770	2.99E-17
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	65	313	2.9E-102
SUPERFAMILY	SSF47781	RuvA domain 2-like	IPR010994	RuvA domain 2-like	402	593	2.97E-51
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	315	388	8.1E-34
FunFam	G3DSA:3.30.470.30:FF:000001	DNA ligase	-	-	64	313	6.9E-110
CDD	cd00114	LIGANc	IPR013839	NAD-dependent DNA ligase, adenylation	5	315	0.0
Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	IPR013839	NAD-dependent DNA ligase, adenylation	2	315	1.0E-128
SMART	SM00278	HhH1_4	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	456	475	3.0
PANTHER	PTHR23389	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	-	-	16	752	1.6E-49
Gene3D	G3DSA:1.10.150.20	-	-	-	440	514	4.7E-27
SMART	SM00292	BRCT_7	IPR001357	BRCT domain	695	772	6.2E-9
Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	IPR004150	NAD-dependent DNA ligase, OB-fold	320	396	1.4E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.