Pseudomonas putida PD1, EX27_RS09715 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTAAGCTACTACCGAGGCTGGGACAAGGACCGGGAACTGCAAGAAGTGCTC GCCTCCTCCCTCCTTCGCGATCAGCAGATGGGCCATACCCAAGCCGGTCCGCAGCGTGCTGATCTGCGCTTGCGGTTGGCTGGCAACAACGCAGCCGACA TCCTGTCGCGTGGTCAGCAAAAGTTGGTGGTATGCGCATTGCGCATTGCCCAAGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCACTGTATTTATCTCGT GGATGACTTGCCGTCCGAACTGGATGACCAGCATCGCCGCGCACTGTGCAGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTGTAGATCAC GAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>EX27_RS09715
|gyrB
ATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACCGATG ATGGTAGTGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCACTGCGATGACATCACTGTCATCATCCACCC GGACGAATCTATCAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGATGTGCATAAGGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACTGTGCTG CACGCCGGCGGTAAGTTCGACGACAACTCCTACAAAGTATCCGGCGGTCTGCACGGTGTCGGTGTGTCGGTTGTGAACGCCCTGTCCGAGAAGCTGGTTC TGACCGTTCGCCGTAGCGGCAAGATCTGGGAACAGACTTACGTTCACGGTGTTCCACAAGCGCCCATGGCGGTTGTCGGTGACAGTGAAACCACGGGTAC CCATATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAACTGTCGTTCCTCAACTCG GGCGTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACGAAGGCGGTCTGCGTGCGTTCGTCGAGTACTTGAACACCAACA AGACGCCGGTCAACTCTCAGGTTTTCCACTTCAACGTTCAGCGTGACGATGGTGTGGGTGTTGAAGTCGCCCTGCAATGGAACGACAGCTTCAACGAAAA CCTGCTGTGCTTTACCAACAATATTCCGCAGCGAGATGGCGGCACCCACCTGGTGGGCTTCCGTTCCTCGCTGACCCGTAGCCTTAACAGCTACATCGAG CAGGAAGGCCTGGCCAAGAAGAACAAGGTGGCAACCACTGGCGACGACGCCCGTGAAGGCCTGACCGCAATCATCTCGGTGAAGGTACCGGACCCGAAGT TCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCGGAGGTGAAAACCGCCGTGGAACAGGAGATGAACAAGTACTTCGCCGATTTCCTCTTGGAAAACCC GAACGAGGCGAAGGCCGTCGTTGGCAAGATGATCGACGCGGCTCGCGCCCGTGAAGCCGCCCGTAAAGCCCGTGAGATGACCCGCCGTAAAGGTGCGCTG GATATCGCGGGTCTGCCGGGCAAACTGGCCGACTGCCAAGAGAAGGATCCTGCTCTCTCCGAACTGTACCTGGTGGAGGGTGACTCTGCGGGTGGCTCGG CCAAGCAAGGCCGCAACCGTCGTACCCAGGCGATCTTGCCGCTGAAGGGTAAAATCCTCAACGTCGAGAAAGCGCGCTTCGACAAGATGATTTCGTCCCA GGAAGTGGGCACGCTGATCACTGCGCTGGGCTGTGGTATCGGCCGTGAAGAGTACAACATCGACAAACTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTTGACGGTTCGCACATCCGTACACTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGGTCGAGCGTGGCTACATCTATATTGCCCAGC CGCCGCTGTACAAGGTGAAACGAGGCAAGCAGGAGCAGTACATCAAGGACGATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAG CCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGTGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCG CGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAAGCCTGGCTGGCCC AGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGCTTACAACGCCAGCCTGCGTGAAGACAAAGAGCGCAACGTATGGCTGCCTGAAGTGGA AATTACCTCTCACGGTCTGGCAAGCTACATCACGTTCAACCGTGATTTCTTCGGCAGCAATGACTACCGTACCGTAGTCAACATTGGTGCCAAGCTTTCG AGCCTGTTGGGTGAAGGTGCGTACGTGCAGCGTGGTGAACGCCGCAAGGCAATCGTCGAGTTCAAAGAGGGCCTGGATTGGCTGATGAACGAGACCACCA AGCGCCATACGATTCAGCGATACAAAGGGCTGGGTGAGATGAACCCGGACCAACTGTGGGAAACCACCATGGACCCGACCGTTCGCCGTATGCTCAAAGT CACTATCGAAGATGCCATCGCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCAGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCG GTGTCGAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTAATTCGCCAGACACTAAAAAGCCCGCTGATGCGGGCTTTTTAGTGTCTGCAAAAAATCAGTAACCGGTGAGAATGTTCACGATCACACCGCT GGCAATAGCCACCAGCACATAGTCGCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGCGCTTTCCAGTCAGTTACCCAGTAA CGGTCACCACGGTAATGAGGATCAACGGCATGACCACGCTGCCACTGCTTATGAGGTACCGGCATGCCTTGTTGTGGGCGGAAGTTTGGATCACGGTAAG CAGGACCGCGGCCATTGTCATGTCGGCCCTGGTGCTGTGGTTGACCCTGTGGCGGGTTGCCTTGGTGCGATGGGCCGCCATCATGCCGATCAGGCGGGCC CGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGTTTTCTTCATTTGATGCGGTCCTCTGCCTGTAATCGCC
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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