Pseudomonas putida PD1, EX27_RS09345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGACGCCTTTGCCCGCTTCGACGCCGACCTTGCGCTGTCGGTGGCCCAGTACGACAAGACCATCGACCGCGAATACAAGACCGCGCTGCGTGAGCTGGTG ACCTACATGATGGAAGACCCGCGCTCTATCTCGCGGGTGCTGAGCGTGATCTGGGTGCTGCGCTCGCTGGAGCGTATTGGCGACCATGCGCGCAACATCT CCGAACTGGTGATCTATCTGGTGCGCGGCACCGACGTGCGCCACATGGGCCTCAAGCGCATGACGGCAGAAGTGCAGGGCACTGCCGTCGCCAACGGCGA AAAGGCTAATGTTCCGGGTGAATCTGACGATAAGTAAGGTTGCTCCCGAGCATCGACGCCCGGCCTTGGCCGGGCGTTTTCGTTTGCGGTCGAGAGCCGG CAGGCACCCGCGAACGATGTGAAGAAGTCCCGGCGTGACCAGGTTGTAGCAAATGGCCATCATTTGGCAGTAGGCTAGTCGGGATTCATAAGGAGTATCG
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| DNA Sequence for Gene |
>EX27_RS09345
ATGAGTAAAGTGAATGTGCTGGTCGTGGATGACGCCCCGTTTATCCGTGATCTGGTCCGCAAGTGTCTGCGCAACGCCTTCCCGGGTATGGCCATCGACG ACGCGGTCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGATCTGGTCCTCTGCGACTGGGAAATGCCGGAAATGTCAGGCCTGGAACT GCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTGCAGTTCATCATGGTGACCAGCCGTGGCGACAAGGAAAACGTCATTCAGGCGATCCAGGCG GGCGTTTCCGATTTTGTAGGCAAGCCGTTCACCAACGAGCAACTGCTGACCAAGGTAAAAAAAGCCCTGACCAAGATCGGTAAGCTCGACAGCCTGATGG CCACCGGCCCGGCGCGAGCCAACCCGGCGTTTGCCAACGATTCGTTGAACGCGCTGACTGCGGGCAAGCCCGAAGCGGTCAAGGTTGCGGCGCCGGTACC GGCCAAACCTTTGGTCGCCGCACCCGCACCTGCTGCCCCCGCGCCGAGCGGCCGTGGCCAGGGCCAGCTGCGCCTGGCCAGTGGCATGCAGCCATGCGTG ATCAAGGCGTTGAGCCTGAAAGAGGCACTGCTGGTGGTACGCCGCAGCGAAGTGCTGCCACAGGTGCTGGAAGGTGCGGTGCTGGACCTGGAGCAGGGCG AAAGTGCCGAAGTTGCTCGCCTGAACGGCTACCTGCATGCGGTGGCGGCGCTGGAGCCAAAACCTGACAGCGACTGGTTGCAGTTGACGTTCAAGTTTGT CGACCAGGATGCCCAGAAGCTCGACTACCTGTCTCGGTTGATTGCCCGCGGCACTGCGCAGAAGCACTTCACCCCCGGTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCGGCCCCGCGTCATGCTTTGGGCAGGAGCAGCACACGGATGCTCCTGCCCAAGCCCGAGTTGCCCCATCCGACCAACTGCAATACCTACCGTAAAAC CCGCTGCTAGGCTTCGACAGATCATAACTGTCAAAAAGCCACTATCATGCCCGCGCGCCTGCTGCTGTTCTGTGCATTGCTCATGGCCTCGGCGTCGAGC CAGGGCGTGACGCTCTACAAGATCACTGACGATTCCGGTGTCGTCTCCTATTCCGACCGCCCTGGCCCCGGCGCCAAGCCCTTGGTGTTGCTCGAGCCCA TGGTCGAAACGCTCGAAGGCCAGGTACTGCTGAACGCGAAAACCTTCGACGGTGGCGTGAGCTTTTCGGCACGAAACGAGCTGCATGTGCCGGTAGAGGT AGAGTTGCGGCTGGACAACCTGGTCAACGCACAAGGCGGTGACGCCCCGCGTATCGTGCGCCGGCTGCTGCCGCCGCGCACCACGCAGATGCTCAGTGTG
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| Amino Acid Sequence |
>chemotaxis protein CheY
MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMAIDDAVNGRKAMAMLGKEAFDLVLCDWEMPEMSGLELLTWCRQQPALKNLQFIMVTSRGDKENVIQAIQA GVSDFVGKPFTNEQLLTKVKKALTKIGKLDSLMATGPARANPAFANDSLNALTAGKPEAVKVAAPVPAKPLVAAPAPAAPAPSGRGQGQLRLASGMQPCV IKALSLKEALLVVRRSEVLPQVLEGAVLDLEQGESAEVARLNGYLHAVAALEPKPDSDWLQLTFKFVDQDAQKLDYLSRLIARGTAQKHFTPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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