Pseudomonas putida YKD221, TR32_RS00850 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTAAGCTACTATCGAGGCTGGGACAAGGACCGGGAACTGCAAGAAGTGCTC GCCTCCTCCCTCCTTCGCGATCAGCAGATGGGCCATACCCAAGCCGGTCCGCAGCGTGCTGATCTGCGTTTGCGGTTGGCTGGCAATAACGCAGCCGACA TCCTGTCGCGTGGTCAGCAAAAGTTGGTGGTATGCGCATTGCGCATTGCCCAAGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCACTGTATTTATCTCGT GGATGACTTGCCGTCCGAACTGGATGACCAGCATCGCCGCGCACTGTGCCGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTGTAGATCAC GAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>TR32_RS00850
|gyrB
ATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACCGATG ATGGTAGTGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCACTGCGATGACATCACTGTCATCATCCATCC GGACGAATCTATTAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGATGTGCATAAGGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACTGTGCTG CACGCCGGCGGTAAGTTCGACGACAACTCCTACAAAGTATCCGGCGGTCTGCACGGTGTAGGTGTGTCGGTTGTGAACGCCCTGTCCGAGAAGCTGGTTC TGACCGTTCGCCGTAGCGGCAAGATCTGGGAACAGACTTACGTTCACGGTGTTCCACAAGCGCCCATGGCGGTTGTCGGTGACAGTGAAACCACGGGTAC CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCG GGCGTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACGAAGGCGGTCTGCGTGCGTTCGTCGAGTACTTGAACACCAACA AGACGCCGGTCAACTCCCAGGTGTTCCACTTCAACGTTCAGCGTGACGATGGCGTGGGTGTTGAAGTCGCCCTGCAATGGAACGACAGCTTCAACGAAAA CCTGCTGTGCTTTACCAACAATATTCCGCAGCGAGATGGCGGCACCCACCTGGTGGGCTTCCGTTCCTCGCTGACCCGTAGCCTTAACAGCTACATCGAG CAGGAAGGCCTGGCCAAGAAGAACAAGGTGGCAACCACTGGCGACGACGCCCGTGAAGGCCTGACCGCAATCATCTCGGTGAAGGTACCGGACCCGAAGT TCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCGGAGGTGAAAACCGCCGTGGAACAGGAGATGAACAAGTACTTCGCCGATTTCCTCTTGGAAAACCC GAACGAGGCGAAGGCCGTCGTTGGCAAGATGATCGACGCCGCTCGCGCCCGTGAAGCCGCCCGTAAAGCCCGTGAAATGACCCGCCGTAAAGGTGCGCTG GATATCGCGGGTCTGCCGGGCAAACTGGCCGACTGCCAAGAGAAGGATCCTGCTCTCTCCGAACTGTACCTGGTGGAGGGTGACTCTGCGGGTGGCTCGG CCAAGCAAGGCCGCAACCGTCGTACCCAGGCGATCTTGCCGCTGAAGGGTAAAATCCTCAACGTCGAGAAAGCGCGCTTCGACAAGATGATTTCGTCCCA GGAAGTGGGCACGCTGATCACTGCGCTGGGCTGTGGTATCGGCCGTGAAGAGTACAACATCGACAAACTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTTGACGGTTCGCACATCCGTACGCTGCTGCTGACTTTCTTCTTCCGTCAGCTGCCAGAGCTGGTCGAGCGTGGCTACATCTATATTGCCCAGC CGCCGCTGTACAAGGTGAAACGAGGCAAGCAGGAGCAGTACATCAAGGACGATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAG CCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCG CGTTTGTACCCGGAAGAGCTGACTGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCC AGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGCTTACAACGCCAGCCTGCGTGAAGACAAAGAGCGCAACGTATGGCTGCCTGAAGTGGA AATTACCTCTCACGGTCTGGCCAGCTATATCACGTTCAACCGCGATTTCTTCGGCAGCAATGACTACCGTACCGTAGTCAACATTGGTGCCAAGCTTTCG AGCCTGTTGGGTGAAGGTGCGTACGTGCAGCGCGGTGAACGCCGCAAGGCAATCGTCGAGTTCAAAGAGGGCCTGGATTGGCTGATGAACGAGACCACCA AGCGCCATACGATTCAGCGATACAAAGGGCTGGGGGAGATGAACCCGGACCAACTGTGGGAAACCACCATGGACCCGACCGTTCGCCGTATGCTCAAGGT CACGATCGAAGATGCCATCGCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCG GTGTCGAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGC GGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCT GGAAGTGCTGAGAGGGTCGGCGGGCGGATCTGAGCAGCAGAGAGATTGAGAGGACTTTAAAACTAATATTTGAACACCTTAATAGTTAATTAAGCGTACG TGTTAAGTATTAATTTGAACAATTTAGTATGGAAATGGAATTTGGTGGAAGTTGCCATTTTGGATTTTTTGTAGATTTCGAAGGGATGTTGGAATAAGAT CTATGACCAACTTTTCCGCTTTGCACTGAAGATTTTCAGCCAAATCAGCTGTTTGAAGCGAGAGCTTCAGACCTGATCCAAATTGCTCCAGCGATCACGA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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