Pseudomonas putida YKD221, TR32_RS03865

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:1.10.260.40	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	IPR014710	RmlC-like jelly roll fold	108	198	1.4E-21
Pfam	PF07883	Cupin domain	IPR013096	Cupin 2, conserved barrel	127	193	6.6E-19
PANTHER	PTHR46797	HTH-TYPE TRANSCRIPTIONAL REGULATOR	-	-	19	198	1.8E-33
SUPERFAMILY	SSF47413	lambda repressor-like DNA-binding domains	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	18	82	1.49E-16
CDD	cd00093	HTH_XRE	IPR001387	Cro/C1-type helix-turn-helix domain	21	78	7.95922E-15
Gene3D	G3DSA:1.10.260.40	-	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	14	86	2.4E-17
SMART	SM00530	mbf_short4	IPR001387	Cro/C1-type helix-turn-helix domain	23	78	2.1E-11
SUPERFAMILY	SSF51182	RmlC-like cupins	IPR011051	RmlC-like cupin domain superfamily	86	197	1.49E-28
Pfam	PF01381	Helix-turn-helix	IPR001387	Cro/C1-type helix-turn-helix domain	24	78	7.2E-11
CDD	cd02209	cupin_XRE_C	-	-	107	195	3.21833E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.