Pseudomonas putida YKD221, TR32_RS04865

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAAGACCCTGGAACACAGCGGCCAGGTCATCCGCATCACCAGCCCGACCCGCTGGGTTGTGGGCTTCCACGCCTTTGACCTGGCGCGGTTTCGCAATGTC ATCAAAGACCCCAACCGCAGCAGCGCCGAGCTGTACCGCTTCGTGGTGCACTACCTGGTGCTGTTCTACTGCCTGAGCAAGTCGCCTGGCCTTGGGCGGC TGTTCGAGGGCTTGCGCTACGGCCTGAGCTTCGAGCGCCTGAAGGGCTTTGGCGACCTGCCGTTCTGCGTCATCAGCTCGCCGGTGCGCTCGGAACTTCC CGACGACTCGGTCATCCGCAGCAGCACGCAGATTGCCGGCAACACCAGCTTCGAAGAACTGGTAGGCCGGGACAACATCCTGGAAATGAACGACGAAATC CGTCAGCGCCTGCTGCTGACGATCGAAGGACTGTAACGCGCAGCGCCCGGCACCGGGCCGCGCAATGATTCGCAGCGAATTGCTCGCACTGGAGAACACG
DNA Sequence for Gene
>TR32_RS04865
ATGGCGAAGAAGGAAAGCACTCAGCACAAACTCGACCGCGTTCGCGCGCCTCGGGTCCATATCACCTACGACGTGGACATCGGCGATGCCATCGAGAAAA AGGAGCTGCCCTTCGTCGTCGGCGTACTGGGTGACTTCTCCGGCAACCCGCTGGAGCCGCTGCCCAAGCTCAAGGACCGCAAGTTCGTGTACATCGACCG CGACAACTTCAACGGTGTGCTCAAGGGCATCAAGCCACGCCTGACCTACCGCGTCGACAACACCCTGGCCAAGAACGGTACCCAGTTGGGCGTGGAGCTG AACTTCAACAGCCTCGAAGATTTCGAGCCACAGAACGTGGTCAAGCAGGTCGAGCCGCTGCGCAAGCTGCTGGAAGTGCGCAACAAGCTGGCCGACCTGC GCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTGATGGACGTGCTGCAGAACACCGAAAAGCTCAAGACCTTGGGCAAGGAATTCGGCCGTGA AGCCGAAGTGAAAGACCCGTCCAGCGACGATCGCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAGGAGCCCGAACATGACCGACAAGCAAACCGCACCGCAACAGGCCGGCGACCTGGTCGAAGTGGAAAACTTCGCGCCACAGCCCTCGCTGCTCGACAG CATCATTTCGCAAAGCCGCGTGGCCCGCTCCGACACCGAGCGCAACCGCACCCGCGACCTGATTGGCGAACTGGTGAACCAGGTGCTCGAGGGTGAGATG ACCCCGAGCAAGGACCTGATCGCCGTGCTCGATTCGCGCATCGCCGAAATCGACGCGATGCTCTCCGAGCAGATGAACGAGATCATGCACGCCCGCGAGT TCCAGCAGCTGGAAGCCTCCTGGCGCGGCCTGAAATACCAGGTGGACCAGACCGAGACCAGCACCACGCTGAAGATCCACCTGCTCAATGCCTCGAAGAA AGACCTGGTGCGCGACCTGAAGGCCGCCAGCGAATTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAAGAGTACGGCACCTTCGGTGGCGCACCT
Amino Acid Sequence
>type VI secretion protein
MAKKESTQHKLDRVRAPRVHITYDVDIGDAIEKKELPFVVGVLGDFSGNPLEPLPKLKDRKFVYIDRDNFNGVLKGIKPRLTYRVDNTLAKNGTQLGVEL NFNSLEDFEPQNVVKQVEPLRKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAEVKDPSSDDRA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site