Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGCGCATCAGGATCACGTCCAGCTCGGCCAGCGGGCTGTCCTGCTCCTCGCCCAGTTCGAACCAGCGTGCAGGGTCGGCAAACACCGTCAGCGGGCGCAT GCGGGCGCGGGCCTTGCCTTCGCCCTGATACAGGTCTTGCTGTTCCATGTAGAACAGGCTCCAGCCGCGTGCCTGGGCGGCCAGCAGCATGGCCAGCGAG CTGTCCTTCTTGTAGGAGATGGACGCGATGGGGTCCATTACAATGCCGAGGCGAACGCTCATGGGGGGTCCTCTTGGCGGCAGGTGGCCGCGGTGGATCG AAAGAAAAGTGGCTCAGGGTGGCGCCGGGAACGCCGCCGGTCAAGGGGCGCGGCAGATGGAATGGCCACCCGGAGTGTGCTAAAAATGCAGCTGCAAGCC TTGAGCTACAAGCCTCAAGAAAAGAGCATCCATGCGCCGAGCTGCTTTCTTGCAGCTTGCCGCTTGCAACTTGCGGCTTCAATCCTACTGGTAGGCGTCT
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DNA Sequence for Gene |
>TR32_RS08720
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCG CCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTTGTCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTG CGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGT TCCGATCAGTTCCTGACCAAACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT GA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGAGCCCCGCCATGGCGCGGTCCTACTTTCCTGATGGGGAAACAGCATGGCCCGAGTTCTGATTGTCGACGACTCGCCGACAGAGATGTACAGATTGAC CGAATGGCTGGAAAAGCACGGCTACCAGGTGCTCAAGGCCAGCAACGGTGCCGACGGCGTGGCCCTGGCCCGGCAGGACAAGCCCGACGCGGTGCTGATG GACATCGTCATGCCTGGCATGAACGGTTTCCAGGCCACCCGCCAGCTCAGCAAGGACCCGGACACCAGCGCTATTCCAGTGATCGTGGTAACCACCAAGG ACCAGGAAACCGACCGTATCTGGGCCACGCGCCAGGGTGCCCGTGACTTCCTGACCAAACCGGTGGAAGAGGAGGCGCTGATCGCCAAGCTCAAAGAAGT GCTGGGGGCTTGACCACCCGCCCGCAAGGCGCGTCGCTGACCGCCTTTGAGTTGTTGCTGGACATCGACCGGCGCTGTCGCCTGCTGGTTGCCGACCAGC
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Amino Acid Sequence |
>chemotaxis protein CheY
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTPVILLSSRDGLFDKARGRVVG SDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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