Pseudomonas putida YKD221, TR32_RS09140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCCTGGTGGCGGCGGCCAAGTCCGATGGGCATATCGACGAGCGCGAGCGGGCGCTGATCGAGGGCGAATTCACGCGCCTGGACAGCGACCGCGAAT TGCAGCACTGGCTGCATGCCGAGCTGAACAAGCCGCTGGACCCGGCCGAAGTGGCCCGCGCTGCGCAAACGCCGGAGATGGCTGCCGAGATGTACCTGGC CAGCGTGATGATGGTCGATCAGGAAAACTTCATGGAGCGTGCCTACCTGGACGAGCTGGCACGTCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAGCTG GAAAGCCAGGTGCGGTTGGCTGCAGTGTAGTGGCGGTGCTTGCCGGGGCGTATTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGGTCCCCC AGGCGCAAAATTCCTAACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAT
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| DNA Sequence for Gene |
>TR32_RS09140
GTGAAGAACTGGACCTTGCGCCAACGGATCCTGGCAAGTTTCGCCGTGATCATCGCCATCATGCTGCTGATGATCGTGGCCGCCTACTCGCGGTTGGTGG CTATCGAAACCGCCGAAGAGGCAGTGGGGACCGACAGCATTCCCGGCGTCTACTACAGCTCGATGATTCGCAGCGCCTGGGTCGACAGCTACGTCACCAG CCAGCAACTGGTGGGCCTGTCCAACCATCGTGAAATCACTTCGGCCGACCTGGAACTGTTCAGAAGCTTCGATAATCGGCTGAAGCAATACATGGCCAGC TACCAGACCACCATCCAGGACAAAGACGACCAGGCCCGCTTCGACAGCTTCGTGCAACTGGAAGAAAGCTACCTCAAGATCGTCAAACAGGTGCTGGATG CCTACGGTCAGCGCAACTACGACGAGGCCCAGCGGCTGATCACCGAGGTCCTCACTCCGGCCTGGAAGGATGGGCGCGAGCACCTGAATGAAGTGATCGA GAATAATCGGGCCTCTGCCGATGCCGCCACCAACGATATCGTCAACGCAGTCAACACGGCCAAGGGCAGCATGGTGGTCTCACTGCTGCTGGCAATCGTC GCTGCCGGCATCTGCGGCCTGTTGCTGCTGCGCGCTATCACAGCGCCCATGCAGCGTATCGTGCATGCCCTCGACAAGCTGCGTTCCGGTGACCTGAGCA TGCGCCTGAGCCTGGATCGCAAGGACGAATTCGGTGCCATCGAAAGCGGCTTCAACGAAATGGCCGAGGCACTGGCCAACCTGGTGGCCCAGGCCCAACG CTCGTCGGTGCAGGTGACCACTTCGGTCACCGAAATTGCCGCCACGTCCAAGCAACAGCAGGCCACCGCCACCGAGACGGCCGCCACCACCACCGAAATT GGCGCCACCTCGCGGGAAATCGCCGCGACTTCGCGGGACCTGGTGCGCACCATGACCGAAGTGACGACGGCTGCTGACCAGGCATCCAGTCTGGCAGGCT CCGGGCAGCAGGGCCTGGCACGCATGGAAGAGACCATGCACCAAGTGATGGGCGCAGCCGACCTGGTCAATGCCAAGCTCGGTATCCTCAACGAGAAAGC CAGCAACATCACCCAGATGGTGGTAACCATCGTCAAGGTTGCCGACCAGACCAATCTGCTGTCGCTCAACGCCGCCATCGAAGCGGAAAAGGCCGGTGAA TATGGCCGCGGCTTCGCCGTGGTCGCGACCGAAGTGCGCCGCCTGGCCGACCAGACCGCCGTGGCCACCTACGACATCGAGCAAATGGTGCGCGAGATCC AGTCGGCAGTGTCGGCCGGTGTCATGGGGATGGACAAGTTCTCCGAAGAAGTGCGCCGCGGCATGTTCGAGGTGCAACAGGTGGGCGAGCAACTCAGCCA GATCATTCACCAGGTGCAGGCCTTGGCGCCCCGCGTATTGATGGTCAACGAAGGCATGCAGGCCCAGGCCACCGGTGCCGAGCAGATCAACCAGGCGCTG GCCCAGCTCAGCGATGCCAGCACCCAGACTGTCGAGTCGCTGCGCCAGGCCAGCTATGCCATCGATGAGCTGAGCCAGGTGGCCGCGGGCCTGCGTGGCG GCGTGTCGCGCTTCAAAGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGATGAACGACTTGCAACTGCGCACCGCGCGGGCGGCGAACACCGGGGGGGCGTTGTACCTGCAGTTTCGCATCAGAGCGCAGCGTTTTGCCCTGAG CGTGCACGAGGTGATCGAAGTGTTGCCGCGTCAGCCGCTCAAACCGATCGCCCAGGCACCTGCCTGGGTCGCGGGTATTCTCGCCCATCGTGGCCAGCTG GTACCGGTCATCGACCTTGCCGCCTTGAGCTTTGGCCAGCCGGCGGTGCAACGCACCAGCACCCGCCTGGTACTGGTGCACTACCGAGGCGGCCTGCAGC TTGGCCTGATCCTGGAGCAGGCCACCGAAACCCTGCGTTGCCAACCGGACGAGTTCCAGCCCTATGGGGTGGACACCGGTGAAGCGCCTTATCTGGGCCC GGTGCGCCAGGATGCCCAGGGGCTGCTGCAGCGCATCGAAGTCAATGACCTGCTGCCCGACACCGTGCACGCATTGCTGTACACGCAAGACCCGACAGGG
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| Amino Acid Sequence |
>chemotaxis protein
MKNWTLRQRILASFAVIIAIMLLMIVAAYSRLVAIETAEEAVGTDSIPGVYYSSMIRSAWVDSYVTSQQLVGLSNHREITSADLELFRSFDNRLKQYMAS YQTTIQDKDDQARFDSFVQLEESYLKIVKQVLDAYGQRNYDEAQRLITEVLTPAWKDGREHLNEVIENNRASADAATNDIVNAVNTAKGSMVVSLLLAIV AAGICGLLLLRAITAPMQRIVHALDKLRSGDLSMRLSLDRKDEFGAIESGFNEMAEALANLVAQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEI GATSREIAATSRDLVRTMTEVTTAADQASSLAGSGQQGLARMEETMHQVMGAADLVNAKLGILNEKASNITQMVVTIVKVADQTNLLSLNAAIEAEKAGE YGRGFAVVATEVRRLADQTAVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMFEVQQVGEQLSQIIHQVQALAPRVLMVNEGMQAQATGAEQINQAL AQLSDASTQTVESLRQASYAIDELSQVAAGLRGGVSRFKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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