Pseudomonas putida YKD221, TR32_RS10145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACTGCTGCTGGGCCGTCTGTACTACGAAGGCAAAACCCTGCCAGCCGACGCTCAAAAAGCCGAGCAGCACCTGCAAGCCGCTGCCGAAGCCGGTGAGA TCAGCGCCCATTACTACCTGGGCCAGCTTTACCGCCGCGGCTACCTGGGCAATGTCGAGCCGCAGAAAGCCGTCGACCACCTGCTGGCCGCCGCCCGTGG CGGGCAGAACAGCGCCGACTATGCCTTGGCTCAGCTGTTCAGCGAGGGCCACGGCATCCGCCCGCAACCGGGCAACGCCTGGGTGTTCGCCCAGCTGTCG CAGGCCAACCCGACGCCGCAATCAGCCGAACTGCTGCAGCAGCTCGACCAGCAACTGACACCTGATCAGCGCAACCAGGCCCAGCAACTGCTGGACCAGG AAAAGCGTGCACGCGGCAGCCTGGCGCAGGGCGCGAATAGCACCCTGGCCCTCGAAGCCCTGCAAGACGACGAAAAAGAAGTAGACGGTGAGGACTCGCT
|
|
| DNA Sequence for Gene |
>TR32_RS10145
ATGACGCTCAATCCCTTCGTGAAAGCCGGCATCGGCCTGAGCTTCGCCCTGCTGTGGTCCTGCCCGACCCTGGCGGAAATGACCGCTGAAAAAAACTTCG GCCTGGACGTGAAAATCACCGGCCAGTCGGAAGACGACCGTGACCTGGGCACCCGCTCTGGCGGCGACGTCAACGGCCTGGGCCTGGATCTGCGCCCGTG GGTGTACGGCGAGCGCGGTAACTGGAGTGCCTACGCCATGGGCCAGGCGGTCGCTGCGACCGACACCATCGAAACCGACACCTTGCGCCAGAACGACGAT GGCACCAGCACCGACACCGGCGACGACAGCCGTCAACCAGACAAAAGCTACCTGGCCATGCGCGAGTTCTGGGTCGGCTACAGCGGCCTTACCGCCTACC CAGGCGAGCAACTGCGCTTCGGTCGCCAGCGCCTGCGCAGCGACGATGGCATGTGGCGCGATACCAACATCGAAGCGCTGAACTGGACCTTCGATACCAC CTTGCTCAAGGCCGACCTGGGCGTCGCCCAGCGCTTCAGCGAATACCGCACCGACCTCACCGAACTGGCGCCGGAAGACAAGGACCGCACCCATATCTAC GGCAACGTCGCCACGCAGTGGACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCG ACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCCTACAACTGGCGCAACGACCACACCGTGAATTACTG GGGCAGCGTCACCTGGCTGACCGGTGACCGCGACAAGCTGAGCACCCAGCAGGTGGGTGACGACCAGGTCGCCACCGGCAAGCAGAGCGGTGACGTCAAC GCCTGGGCAACCGACCTCGGTATCCGCCTGCGTCTGGACCCGCAATGGCAGGTCGGCGCCGCGTACGCCCGCGGTAGCGGCGGCGGCGGCGATGACGGTT CGAACAACTTCGAGCAGACCGGCCTGGAGAGCAACCGCTCCAACTTCACCGGCACCCGCTCGCGTGTGCACCGCTTCGGCGAAGCGTTCCGCGGCGAGCT GGGCAACCTGCAGGCCGCCACCCTGTTCGCTTCGTGGCAGCTGCGTGACGACTATGACGCGAGCCTGATCTACCACAAATTCTGGCGGGTCGATGGCAAC CAGAACATCGGTTCCAGTGGCATCAACGCGGTGGTCAACGACAACGGCGTGAATCGCCCGCTGGTCGATGGCGAAAAAGACCTCGGCCAGGAAATGGACG TGGTCGTGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCTTCGATGAGCCAGGCCATCGACGAGCCGTCAGCCCTGGTGCGCCTGCGTGCCGGTGTATT CAAGCCGGGCGACGCCTACGGCAAGGAAGCGGACTCGTACATGCACCGCGCCTTCGTCGACGTCATCTGGCGCTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCCGGTAGGGGACTAACCGTGATGAACCTTCACCCGCACTTACGTCACAGCCTGTTGGCCAGTGCCTTGCTGCTGGCAAGCGGCCTGGCCACTGCCGCA GAACCCCAGGTGATCGCCAAGGAGCTGCAGCAGGCCAAGACCTATACGGTGGCCAGCGCACCGATCGAGCCGCTGCAGATGGACCCGCCAAAGCTGCCCG ACCTCACCGGTTTCACGGCCGAGGCGGTGCAGAAGAAAATCGACCGCCGCCACAAGGGCAAGGTCAGCCTGCGCCGTATGTTCCAGGAGGACACCCTCAA GGAGTTCGTCGGCGGCGACAACAAGGCCGCCGAGTGGGTGCAGCGCCAGCACGGCATCCCGCAGGCGATCTTCGTCGATGACGGCCATGTCGACCTGACC GAGCTGAGCAAGAAGGTGCCCAAACAGTACTTCAGCGAAGTCGAGCCTGGGGTTTACCTGGCACGCCTGCCGATCGTGGTCGGGCAAAAGGGCATCCTCG
|
|
| Amino Acid Sequence |
>alginate biosynthesis protein AlgE
MTLNPFVKAGIGLSFALLWSCPTLAEMTAEKNFGLDVKITGQSEDDRDLGTRSGGDVNGLGLDLRPWVYGERGNWSAYAMGQAVAATDTIETDTLRQNDD GTSTDTGDDSRQPDKSYLAMREFWVGYSGLTAYPGEQLRFGRQRLRSDDGMWRDTNIEALNWTFDTTLLKADLGVAQRFSEYRTDLTELAPEDKDRTHIY GNVATQWTPGHWVGLRAHHTHDSGSLKNPGETVDALDKTRTGDLTWLGLEANSDAYNWRNDHTVNYWGSVTWLTGDRDKLSTQQVGDDQVATGKQSGDVN AWATDLGIRLRLDPQWQVGAAYARGSGGGGDDGSNNFEQTGLESNRSNFTGTRSRVHRFGEAFRGELGNLQAATLFASWQLRDDYDASLIYHKFWRVDGN QNIGSSGINAVVNDNGVNRPLVDGEKDLGQEMDVVVTKYFKQGLLPASMSQAIDEPSALVRLRAGVFKPGDAYGKEADSYMHRAFVDVIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|