Pseudomonas putida YKD221, TR32_RS10090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGCCGAGCAGGTGGTTGCCCTGATCAAGGCCGAGCAGGCCAAAGGCATCAACCTGTCGCGGATCTTCCTGGCCGGCTTCTCCCAGGGCGGCGCGGTG GTGCTGCACACTGCCTATATAAAGTGGCAGGAAGCACTGGGTGGGGTGATCGCCCTGTCCACCTATGCCCCCACCTTCAATGACCAGCATCAGTTGAGTG CCTGCCAGCAGCGCACACCGGCCCTGTGCCTGCATGGCGTGCATGACCCGGTGGTCATCCCGTCCATGGGCCGTACCGCCTTCGAGTACCTGAACACCTG GGGCGTCGCTGCCCGCTGGTACGAATACCCGATGGAACACGAAGTGGTGGTCGAAGAACTGAACGATATCCACGACTGGCTGAGCAAGCAGCTGCAATAG GCAGCCTCGCTTGTAGTTGTGGGCGTATTCCGCTACGCCGCGCCCGGATCTTGCATTACACTGCCCGGCGTACATTCCTTAATCAGTTGATGAGACGACC
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| DNA Sequence for Gene |
>TR32_RS10090
GTGCTCAAAGCACTCAGAAAAATATTCGGCAAGGGAGAGGCCGCGCCACAAGCCGCCGCTCCTGCTGCCAGCGTGACGCCGGAAGCCCGGCCCGCGGCAA AACCGGCCGCACCCCATGCCAACCCCGCCCCCAAGGCTGAGCAACCTGCCGCCGCGACGCCACCTGCCGATCAACCGGCCAAGGACAAACCGCGCCGCGA ACGCAAGCCCAAGCCACAGGCCAGCCTGTGGAAGCCCGAAGACTTCGTGGTCGAGCCACAGGAAGGCAAAACCCGCTTCCACGACTTCAAGCTGTCCAAC GAGCTGATGCACGCCATCCACGACCTGGGCTTCCCGTACTGCACGCCAATCCAGGCGCAGGTCCTGGGTTACACCCTGCGTGGCCAGGACGCCATCGGCC GGGCCCAGACGGGCACCGGCAAGACGGCCGCCTTCCTGATCTCGATCATTTCCCAGTTGCAGCAGACGCCACCGCCTAAAGAGCGCTACATGGGCGAGCC GCGCGCGCTGATCATCGCCCCCACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCTGCCCTGACCAAGTACACCGGCCTGAACGTGATGAGCTTC GTCGGTGGCATGGACTTCGACAAGCAGCTCAAAGCCCTGGAAGCGCGCCACTGCGATATCCTGGTGGCCACCCCGGGCCGCCTGCTGGACTTCAACCAGC GTGGCGAAGTGCACCTGGACATGGTCGAGGTGATGGTGCTTGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCCCCAGGTCCGCCAAATCATTCG TCAGACACCGCCGAAAAGCGAGCGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGATGTGATGAACCTGGCCAAGCAGTGGACCACCAACCCTGCC ATCGTCGAGATCGAGCCGGAGAACGTGGCCAGCGAAACGGTGGAGCAGCACGTGTATGCGGTGGCCGGCAGCGACAAGTACAAACTGCTGTACAACCTGG TAACCCAGAACAAGTGGGAACGGGTGATGGTGTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAAAAGCTGGTACGCGACGGTATCAATGCCGC CCAGCTGTCGGGCGACGTGCCGCAGCACAAGCGCATCCGAACCCTGGAGAGCTTCCGCGAAGGGCGCATCACCGTGCTGGTGGCCACCGACGTGGCCGGG CGCGGGATCCATATCGATGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAAGACCCTGACGACTACGTGCACCGCATTGGCCGTACCGGCCGTGCCG GCACCAGTGGTGTGTCGATCAGCTTTGCCGGTGAAGATGACTCGTATCAGCTGCCAGCGATCGAAGCGCTGCTGGGGCGCAAGATCAAGTGCGAGATGCC GCCGGATGAACTGCTCAAGCCGGTGCCGCGCAAGCATCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTTCAGCAGGCTACATGCGCCCTGTGGCGGCGGCCTTGTGTCGCGATTGGGCCGCGCAGCGGCCCCGGGATTTCGGCTTTGATGCGGAGATTGTCGGGGG CCGCTCCGCGGCCCTTTCGCGACACAAGGCCCCACACGGATGGCGCCAGCTTTCAGAAATTGAGCAAGACAGTTGTTCCCACAAAGGATCAGCGGCGCCT TGATTACCAGCGGCCCACCGCATCCTGGTCACTCTGCTTCCCCTCCACCCATCCAGTGGTGTGTCAATTAGCTTTGCTGGTGAAGATGACTCGTATCATC ACTGACCTTCAGCGGGCTACACGCGATCAATCTGTGGGAGCGGCCTTGTGTCGCGATTGGGCCGCGCAGCGGCCCCGGGATTTCGGCTTTAATGCGGAGA TTGTCGGGGGCCGCCACGCGGCCCTTTCGCGACACAGGGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAATACGGTAGTGGCGGCAACGGTGAACGGCGG
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALRKIFGKGEAAPQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATPPADQPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSN ELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSF VGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPA IVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAG RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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